Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0539 ATGCGGATGAGCTGCAATGGATGCCGAGTTCTGAGAAAAGGTTGTAGTGAGAATTGTAGCATCAGGCCTTGTTTGCAGTGGATCAAATCTCCCGAATCTCAAGCCAACGCTACTGTGTTTCTCGCTAAATTCTACGGCCGAGCTGGCCTCTTGAATCTCGTCAACGCTGGTCCTCAACATCTTCGTCCAGCTATTTTTCGATCCTTGCTGTACGAGGCTTGCGGCCGGATTCTGAACCCGATTTATGGATCCGTGGGTCTTTTATGGTCCGGCAGCTGGCAGCGTTGTCAGTCCGCCGTGGAGGCGGTGCTGAAGGGTGTTCCGATCACTCCGATCAACTCCGACGCCGCCGTCACCGAGCGGGGCCCGCCGCTGAAGGCTTACGACATACGCCATGTGTCCAAGGACGAGAACTCGGCCGCGAGTAAAGAGAGTGAGAGCGTGGTTTCGGTGGAGACCACCGAGACGTCGATTCTCTTCCGAGATGAACCGAAATCGACGGCTGTGAAACGAAGTGACCGCGGGTTCGATGAGGAGGGAGGTGACGTGGCACTGGAGTTGACGCTTGGGTTCGAACCGGTGTCGCGTGCGCAGCACGTGATGCCTGTGAAGAAGAGGAGGGTGGAATTAAGGGACTGTGGCGGCTCGGCTGAGAGTGAGAACGGCTCATGCAAGGTGAAGCTGGGGCTTGAATACTCGGCTTTGGCTTGA 711 0.5626 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLLNLVNAGPQHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGSWQRCQSAVEAVLKGVPITPINSDAAVTERGPPLKAYDIRHVSKDENSAASKESESVVSVETTETSILFRDEPKSTAVKRSDRGFDEEGGDVALELTLGFEPVSRAQHVMPVKKRRVELRDCGGSAESENGSCKVKLGLEYSALA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0539 236 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Sto10g0539 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 145 - -
Sto10g0539 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 141 231 - -
Sto10g0539 236 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Sto10g0539 236 PIRSF AS2 141 234 IPR017414 -
Sto10g0539 236 PIRSF AS2 1 174 IPR017414 -
Sto10g0539 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 141 231 - -
Sto10g0539 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0539 Sto-Chr10 4497109 4498202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0539 1 230 AS2 family AT3G02550 55.431 1.54e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto10g0539 LOB 1.7e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0539 10 4497109 4498202 Sto10g0539 10 4497109 4498202 ECH
Sto8g2153 8 14121685 14122606 Sto10g0539 10 4497109 4498202 ECH
Sto11g0707 11 8077303 8078235 Sto10g0539 10 4497109 4498202 ECH