Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0313 ATGAATCGAGATTCGACAATGGAGGTGCTGCAGAGAGATGCGGATCGGGTCAAGGGCCCATGGAGCTCCGAGGAGGACGAGATTTTGAAGAGATTCGTAGAGCGTCACGGCGCGCGGAATTGGTCGGAGATCAGCAAGGAGATCTCCGGGCGGTCGGGGAAGTCGTGCCGCCTTCGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCGCGGCGCCTTCACCCCCGAGGAGGACGAGATCATCGTGCGGGCTCACGCCAAGTACGGCAACAGATGGGCCACCATAGCCAAACTCCTCAACGGCCGTACGGACAACTCCGTGAAGAACCATTGGAACTCCACGTTGAAGCGCAAGCACTCGATCGGCGAAGATGATCTATCACTTTATCCGCCGGCGAAGAAGGCGGCCGGCGTCGATCGATCTCCGGCGATTCCGTCAATCTCAGCGAGTAGCCAATCTGAATCGGATTTGAGCGATTCAGGTGTTCTTCCTCAGGTAATCTCATCGTCGTCTTGGACGACTCTGATTAGACCTGTAGCGAAACCGATCAGTGCGATCTTCATGAAGGAGCCGTCCACAGAACTCACTCTGTCTCTTCCAGGAGCAGAGTGGAGTGATAGCATTACAGAGCATGAGAAGCCAGCGTCTGCATCAGCAGTATTATCATCGGAATCAGAAGCATTTGGACCAGAGTTAGTATCAATGATGAAGGAGATGATAAGGGTGGAGTGGTCAAATTTGGCTGCGACTCCACTACCATATGAGTTGCTTGAAGAGTTCAATTTTActtga 792 0.5366 MNRDSTMEVLQRDADRVKGPWSSEEDEILKRFVERHGARNWSEISKEISGRSGKSCRLRWCNQLSPEVERGAFTPEEDEIIVRAHAKYGNRWATIAKLLNGRTDNSVKNHWNSTLKRKHSIGEDDLSLYPPAKKAAGVDRSPAIPSISASSQSESDLSDSGVLPQVISSSSWTTLIRPVAKPISAIFMKEPSTELTLSLPGAEWSDSITEHEKPASASAVLSSESEAFGPELVSMMKEMIRVEWSNLAATPLPYELLEEFNFT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0313 263 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Sto10g0313 263 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Sto10g0313 263 PANTHER TRANSCRIPTION FACTOR MYB73 12 215 - -
Sto10g0313 263 MobiDBLite consensus disorder prediction 144 160 - -
Sto10g0313 263 SMART sant 17 66 IPR001005 -
Sto10g0313 263 SMART sant 69 117 IPR001005 -
Sto10g0313 263 CDD SANT 72 115 IPR001005 -
Sto10g0313 263 Gene3D - 72 118 - -
Sto10g0313 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Sto10g0313 263 PANTHER MYB PROTEIN-RELATED 12 215 - -
Sto10g0313 263 MobiDBLite consensus disorder prediction 134 160 - -
Sto10g0313 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 64 IPR017930 -
Sto10g0313 263 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Sto10g0313 263 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Sto10g0313 263 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Sto10g0313 263 CDD SANT 20 62 IPR001005 -
Sto10g0313 263 Gene3D - 17 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0313 Sto-Chr10 2486254 2487396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0313 14 206 MYB Transcription Factor Family AT5G67300 51.675 1.97e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto10g0313 Myb_DNA-binding 7.5e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0313 10 2486254 2487396 Sto10g0313 10 2486254 2487396 ECH
Sto2g0536 2 4602140 4603297 Sto10g0313 10 2486254 2487396 ECH
Sto5g1150 5 7678687 7679631 Sto10g0313 10 2486254 2487396 ECH