Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0280 ATGGCTCAGGTTCAGGTTCCGCCTCAGAATGCGATTCCAGGGGCTAACGGTGCCCCGGCAAGTGGTGGGGCCAACCAGTTCGTGACGACGTCGCTTTATGTTGGAGATCTTGATGTGAACGTTACGGATTCGCAGCTATATGATCTGTTTAGCCAAGCGGGTCAGGTTGTCTCTGTTAGGGTTTGTAGGGATTTGACCAGCCGGCGATCTCTTGGATACGGTTATGTCAACTTCAACACTGCGCAAGAagCTGCCAGGGCACTGGATTTGCTGAACTTCACTCCTCTTAACAACAAGCCCATCCGAGTTATGTATTCGCATCGTGATCCCAGTATTCGGAAAAGTGGGGCaggaaatatatttattaagAATCTGGACAAAGCAATTGATCACAAAGCATTGCATGATACCTTTTCTGCATTTGGGAATATCCTTTCATGCAAAGTAGCTACAGATTCGTCTGGCCAGTCAAAGGGCTATGGCTTTGTGCAATTTGATAATGAAGAATCTGCTCAGAAAGCCATAGAGAAGCTAAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGATAGTGCAGTTgacaaaacaaaatttaacaaTGTTTTTGTAAAGAACCTATCTGAGTCAACTACTGATGAAGATTTGAAGAAAAGTTTTGGTGAATTTGGAACAATTACAAGTGCTGTGGTGATGAGGGATGGGGATGGAAAGTCAAAGTGCTTTGGTTTTGTGAACTTTGAGAATGCTGAAGATGCTGCCCGAGCTGTTGATGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAATTGAAAATTCGATTTGAGCAGAGCATGAAAGAAGCCGCTGACAAATATCAAGGGGCCAACTTGTATGTTAAAAATTTAGATGATAGCATTGGTGATGATAAACTTAGAGAGCTCTTCTCTCCATTTGGGACTATTACCTCGTGCAAGGTTATGAGAGACCCCAACGGAATAAGCCGAGGATCAGGGTTTGTTGCATTCTCAACTCCTGAAGAGGCATCCAGAGCACTCTTGGAGATGAATGGCAAGATGGTGGTTAGCAAGCCTTTATATGTTGCTCTAGCCCAACGTAAAGAGGATAGAAGAGCTAGACTGCAGGCTCAATTTGCTCAAATGCGGCCTGTTGCAATAACACCTTCTGTAGCTCCGCGTGTGCCAATGTACCCTCCTGGTGGTCCAGGTATTGGGCAACAGATATTTTATGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTACCCGGTATGAGGCCTGGAGGTGGAAGACGTGCAGGTGCAGTCCAGCAGAATCAGCAGCCAATGCTTCCAAGGGGACGCGTCTACCGCTATCCTCCTGGTAGGGGTCTGCCCGATGTACCCATGCCCGGGGTGGCCGGAGGTATGTTTTCTGTCCCATACGACATTCCTATTGGGGCTTTGGCTTCTGCCCTGGCAAATGCTACTCCAGAGCAGCAGAGGACGATGCTGGGAGAGAATCTTTACCCTCTTGTGGAACAGTTGGAGCCTGATAATGCGGCTAAGGTTACCGGTATGCTTCTGGAGATGGATCAGACTGAAGTTCTGCACTTGCTAGAGTCACCTGAAGCTCTAAAAGCAAAGGTAGCTGAGGCAATGGATGTTCTGAGGAATGTAGCTCAGCAGCAGCAGCCTGGCGGTGCCGCCGAGCAACTCGCCTCGTTATCACTTAATGACAACCTTGTTTCTTGA 1830 0.4623 MAQVQVPPQNAIPGANGAPASGGANQFVTTSLYVGDLDVNVTDSQLYDLFSQAGQVVSVRVCRDLTSRRSLGYGYVNFNTAQEAARALDLLNFTPLNNKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKTKFNNVFVKNLSESTTDEDLKKSFGEFGTITSAVVMRDGDGKSKCFGFVNFENAEDAARAVDALNGKKIDDKEWYVGKAQKKSERELELKIRFEQSMKEAADKYQGANLYVKNLDDSIGDDKLRELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAITPSVAPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGRRAGAVQQNQQPMLPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDIPIGALASALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQPGGAAEQLASLSLNDNLVS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0280 609 Gene3D - 119 191 IPR012677 -
Sto10g0280 609 SMART rrm1_1 119 191 IPR000504 GO:0003723
Sto10g0280 609 SMART rrm1_1 313 385 IPR000504 GO:0003723
Sto10g0280 609 SMART rrm1_1 31 104 IPR000504 GO:0003723
Sto10g0280 609 SMART rrm1_1 210 282 IPR000504 GO:0003723
Sto10g0280 609 CDD RRM1_I_PABPs 31 110 - -
Sto10g0280 609 SUPERFAMILY PABC (PABP) domain 469 603 IPR036053 GO:0003723
Sto10g0280 609 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 510 587 IPR002004 GO:0003723
Sto10g0280 609 Gene3D - 506 589 - -
Sto10g0280 609 Gene3D - 294 397 IPR012677 -
Sto10g0280 609 CDD RRM3_I_PABPs 208 287 - -
Sto10g0280 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Sto10g0280 609 SUPERFAMILY RNA-binding domain, RBD 209 392 IPR035979 GO:0003676
Sto10g0280 609 Gene3D - 194 293 IPR012677 -
Sto10g0280 609 CDD RRM2_I_PABPs 116 192 IPR045305 -
Sto10g0280 609 PANTHER RNA BINDING PROTEIN 19 592 - -
Sto10g0280 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Sto10g0280 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Sto10g0280 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Sto10g0280 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Sto10g0280 609 Gene3D - 21 118 IPR012677 -
Sto10g0280 609 PANTHER POLYADENYLATE-BINDING PROTEIN 19 592 - -
Sto10g0280 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Sto10g0280 609 SMART poly_2 522 585 IPR002004 GO:0003723
Sto10g0280 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Sto10g0280 609 SMART rrm2_1 31 104 IPR003954 GO:0003676
Sto10g0280 609 SMART rrm2_1 210 282 IPR003954 GO:0003676
Sto10g0280 609 SMART rrm2_1 119 191 IPR003954 GO:0003676
Sto10g0280 609 SMART rrm2_1 313 385 IPR003954 GO:0003676
Sto10g0280 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Sto10g0280 609 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 473 IPR006515 GO:0003723
Sto10g0280 609 Pfam Poly-adenylate binding protein, unique domain 518 582 IPR002004 GO:0003723
Sto10g0280 609 CDD RRM4_I_PABPs 311 389 - -
Sto10g0280 609 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0280 Sto-Chr10 2249251 2253343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0280 1 604 Eukaryotic Initiation Factors Gene Family AT4G34110 70.497 0.0 898
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0280 10 2249251 2253343 Sto10g0280 10 2249251 2253343 ECH
Sto2g0581 2 4895338 4924368 Sto10g0280 10 2249251 2253343 ECH
Sto5g1168 5 7833138 7843670 Sto10g0280 10 2249251 2253343 ECH