Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0269 ATGCAAGGTCACGGAAGGACTATAGGGTCCTTTCCAGGGATTGTTAGTATGATGCAGGAGCCTAGCTCTAGTGGTACTGATATGAATCAGCAGACTTCCTTGAATCACATGCAAACTGCCGTAGATGCTCGGCTGTCGGATTTTATGGGATCTTCTGGTGAGACTGCATGTCTACGTGCCAGTGGTCCTAATCTTCAGAGCTTTAGTGGATGGAATACTGGTGAATCTAGTTCTGGCCTGAATCTCCACAACCAAGTCAATGATGATGGGCTAAAAGCAGAACATGGCTGGTCTTCTTCATGTAGTGCTCCTGCTGAGGACGGTCTAAGATCAGCTGAAAGGCAATTTGAATTGGATAATGTAACTTCCCCAGTTAACTCCAATACCAATTTACTTGGAAATCAATCCAGAATTCAGCCTTTATTTTTGCAAGGTTCCAGCTCCAGTCGTACCACTCAGAATGTGACTCTAAATATGGGTCCCATTGGTAGTTCTGCTAATCGTGGGAAGGGAACTGAAGCTTGTAGCAGTAATAATATCCACGATGCTTGTGGATTAAATAGAGAGCACTCATCATTTGGCAGTGCTTGTGATCATATAGGAACTTCATCTGGAAGCTCTTGTTACAGGGTAGGGGGAGATAATGCTAGTTCAAGTTCTTCTTTAGTAAATTGGGGTTCCTCCTGCAAGAGAAAGGCCCTTGAAAGTAGTTCTGGGCAGCTGTGTGCTGGAGGAAGCTCAAGCTCTTTTCTAGAAGCTGAAAACAGTCGTTGGTCCATGGGAACTGCCAATCCTAATGCATCCAGCAGTTTAAATGTTTCTAGACCAGAGGATATTCCTATTACTAATCCTTCAGGACAGCAGAACCCGCAAAACGAGGCAATGCAAATAGCTTCTGATGCATTCCCTTTAATTAGTGTTGTGGGAAATGTGAACAGGCCTCTGAGAAACTTCGATAGGAGGATGAATTATCCCCAACGTCAGGAATCTAGGCATCCAAATAATTCTTCTTCCCGTCAAACACCTAGCTCACACCCATTTAATGATTCTCTGGAATTAAGGTTGACAGCTGGAGTTACGGCAGCCAATTCTAGTGCTTCTCAGTGCCAATCTCATGTCATGCACCTCCCTGGTTTGGCGGGGAACGTGCATCCTTTTTCTTATGGAGCGGGTAGTTCAAGAGGAGCCAGTTCGTCAACTTCTTATAATTCTGCTGAAAGAGAAGTTCGGGAAGAATTAAACTCAAGAATTTTACCAAGAGACAATACTGAACACCCCATCCTTGTGCCTGTATCTTCAGGACTTGACTCTACAAGTTGGCATATGCCATCTAACAATGTAAACAACTCTGGAGTTGTACCTCCTCTTTCCTGGATTGGATCCAGCCCAAGTGTCCAAATGGTGCCTAGTCCCAGCTGGATTGTTCCCCATGAAGGCCCAACACAGAGCCAGCAAAGATTATCAGAGTTCAATCCACGGTCCTTTTTTCCATCAATGAGCTCAGCATCTGGTGTTCATAATGGTCATTCTGCCTCTTCTTCTGGTCCTCCTTCCTTTACTCAGGGTATGATCGGCTATCAAACTTACCCAAGAATAGCAATAGATAGAAGAGGTGAAGATGTTCTTAGTGCTCCTCATTCATTGCGGGCTTTAGCTGTTGACATGGAGGGGAGACGCAGATTGATATCTGAGATTCGTCAAGTCTTAAATGCAATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATCTATCATGGTATGGCTGAAATGCATGACAGGCACAGAGACATGCGCCTTGATGTTGATAACATGTCTTATGagGAATTATTGGCATTGGAGGAGCGCATAGGAGATGTGAACACTGGATTGAGTGAGGATAGCATTATGAAGTTGATGAAACGACGACTCTTCATGTCTGTCATGACCGAGTCTTCAATGGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAGGATGTAGCTTCACTAGATTGTGGACATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACAACTGCCTTAACTCCATGA 2118 0.4452 MQGHGRTIGSFPGIVSMMQEPSSSGTDMNQQTSLNHMQTAVDARLSDFMGSSGETACLRASGPNLQSFSGWNTGESSSGLNLHNQVNDDGLKAEHGWSSSCSAPAEDGLRSAERQFELDNVTSPVNSNTNLLGNQSRIQPLFLQGSSSSRTTQNVTLNMGPIGSSANRGKGTEACSSNNIHDACGLNREHSSFGSACDHIGTSSGSSCYRVGGDNASSSSSLVNWGSSCKRKALESSSGQLCAGGSSSSFLEAENSRWSMGTANPNASSSLNVSRPEDIPITNPSGQQNPQNEAMQIASDAFPLISVVGNVNRPLRNFDRRMNYPQRQESRHPNNSSSRQTPSSHPFNDSLELRLTAGVTAANSSASQCQSHVMHLPGLAGNVHPFSYGAGSSRGASSSTSYNSAEREVREELNSRILPRDNTEHPILVPVSSGLDSTSWHMPSNNVNNSGVVPPLSWIGSSPSVQMVPSPSWIVPHEGPTQSQQRLSEFNPRSFFPSMSSASGVHNGHSASSSGPPSFTQGMIGYQTYPRIAIDRRGEDVLSAPHSLRALAVDMEGRRRLISEIRQVLNAMRRGENLRAEDYMLFDPFIYHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVNTGLSEDSIMKLMKRRLFMSVMTESSMDLEPCCICQEEYADGEDVASLDCGHEFHTNCIKQWLMQKNLCPICKTTALTP 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0269 705 SMART ring_2 658 698 IPR001841 -
Sto10g0269 705 MobiDBLite consensus disorder prediction 1 30 - -
Sto10g0269 705 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 704 - -
Sto10g0269 705 MobiDBLite consensus disorder prediction 16 30 - -
Sto10g0269 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 704 IPR045191 GO:0061630
Sto10g0269 705 MobiDBLite consensus disorder prediction 261 291 - -
Sto10g0269 705 MobiDBLite consensus disorder prediction 499 519 - -
Sto10g0269 705 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Sto10g0269 705 CDD RING-H2_TTC3 657 699 - -
Sto10g0269 705 MobiDBLite consensus disorder prediction 317 349 - -
Sto10g0269 705 SUPERFAMILY RING/U-box 644 703 - -
Sto10g0269 705 MobiDBLite consensus disorder prediction 328 349 - -
Sto10g0269 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 703 IPR013083 -
Sto10g0269 705 Pfam Ring finger domain 658 699 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0269 Sto-Chr10 2168095 2173157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0269 18 703 C3H Transcription Factor Family AT2G15530 35.762 3.34e-110 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0269 10 2168095 2173157 Sto10g0269 10 2168095 2173157 ECH
Sto2g0586 2 4958675 4961783 Sto10g0269 10 2168095 2173157 ECH
Sto5g1170 5 7860039 7863605 Sto10g0269 10 2168095 2173157 ECH
Sto9g3542 9 34435145 34438460 Sto10g0269 10 2168095 2173157 ECH