Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0080 ATGGGATTGAGGCgccttcttctctttctcacaATCCTCAGCTTCCTCACATTATCTTTCCTCTCAGAGGTACAATCGACGTCGTTCAAGATCGTGAACAAGTGCCGCCACACCATATGGCCGGGATTGCTCTCCGGCGCCACCTCGCCGCAGCTTCCCACCACTGGCTTCGCTCTCAAAAGAGGTAAGTCAAAGACCATAAGCATCCCAAAATCTTGGTCGGGTCGGATATGGGCTCGGAGCTTATGTGGCCTAGATTCCGACGGAAAGTTCTCCTGCCTCACCGCGGATTGTGGTTCCGGCAAAGTACAGTGTGCCGGCGGCGGAGCAAAACCGCCGGCGACGTTGGCGGAGTTCACTCTCAACGGCGCCGACGGCTTAGATTTCTACGACGTGAGCTTGGTCGATGGCTACAACCTGCCGATGCTGATCGTCGCGAAGGGAGGAAAACGCGGCGGATGCAGCGCCACCGGGTGTTTGGTGGACCTGAATGGAGCATGCCCGGCGGATCTAAGGGTGGCGCGTGGGAATGGTACTGGTGGTAGCGTGGCTTGCAGAAGCGCGTGTGAGGCATTTGGGGATCCGCAGTATTGTTGCAGTGAGGCGTACTCAACGCCTGACACGTGTCATCCTTCGGTATATTCAGAATTCTTCAAGCATGCTTGCCCTCGCGCGTATAGCTACGCGTATGATGACAAGACTAGTACGTACACGTGTGCTTCAGCTGACTACTTGATCATATTCTGCCCATTACCCTACACCAGTCAAAAGGTGCTGGGAGCACGAAAAGATGGTGCACCACTTCCTCTGGTAAACAAGACCATGATGTACTTATCATCAAGGCAACATTCAGgggcatcttcttcttcttcatcaacaGGTCTGAACCAAATGCAGATTATGGCTCATGTTGCTGTggcatttttaatttactcttcTGCCCTCTTTTTCATCTTTTATAGTGACTGA 969 0.4985 MGLRRLLLFLTILSFLTLSFLSEVQSTSFKIVNKCRHTIWPGLLSGATSPQLPTTGFALKRGKSKTISIPKSWSGRIWARSLCGLDSDGKFSCLTADCGSGKVQCAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGKRGGCSATGCLVDLNGACPADLRVARGNGTGGSVACRSACEAFGDPQYCCSEAYSTPDTCHPSVYSEFFKHACPRAYSYAYDDKTSTYTCASADYLIIFCPLPYTSQKVLGARKDGAPLPLVNKTMMYLSSRQHSGASSSSSSTGLNQMQIMAHVAVAFLIYSSALFFIFYSD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0080 322 PANTHER OS03G0233200 PROTEIN 8 261 IPR001938 -
Sto10g0080 322 SMART tha2 29 250 IPR001938 -
Sto10g0080 322 ProSiteProfiles Thaumatin family profile. 26 250 IPR001938 -
Sto10g0080 322 CDD TLP-PA 28 249 - -
Sto10g0080 322 SUPERFAMILY Osmotin, thaumatin-like protein 28 250 IPR037176 -
Sto10g0080 322 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Sto10g0080 322 Pfam Thaumatin family 33 250 IPR001938 -
Sto10g0080 322 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 8 261 - -
Sto10g0080 322 Gene3D Thaumatin 27 250 IPR037176 -
Sto10g0080 322 PIRSF PR5 2 310 IPR001938 -
Sto10g0080 322 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Sto10g0080 322 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Sto10g0080 322 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Sto10g0080 322 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0080 Sto-Chr10 607190 610284 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0080 10 607190 610284 Sto10g0080 10 607190 610284 ECH
Sto5g0130 5 764024 765267 Sto10g0080 10 607190 610284 ECH
Sto10g0080 10 607190 610284 Sto11g1468 11 13923567 13924695 ECH