Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0576 ATGCGAATGAGTTGTAATGGATGTCGTGTTCTGCGCAAAGGGTGTAGCGAAGATTGTAGCATAAGACCCTGTTTGCAGTGGATCAAGAACCCAGAATCGCAGGCTAATGCAACCGTGTTTCTTGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCATCAACGCTGGCCCTGAACACCTACGTCCagCGATTTTTCGATCCTTGTTATACGAGGCATGCGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCTGGGAGCTGGCAGCTCTGTCAAGCCGCCGTTGAAGCCGTTTTGAAAGGCGAGCCGATCACGCCGATCACATCTGAAGCCGCGACTAACGGGCAGGGCCCACCACTCAAGGCCTACGACATACGCCACGTGTCGCGAAACGACAACTCGGCAAACCAAACTCAAAAGGCCAAGACCCGGTCCCGGTTCAAGCGAACCGGCGGAACCCTCATTAAGCCGAAGGCCAGCAAGGGAACCGGGTTCGTTCCGACTGAACCGGAAGCGAACCGGACCGCGAGTCACGAGTCGGCACTGAGCCACTTGTCGGAGGCGGCGGCGATGGTGGAGGGAGAAAGAGAAAGCAAAGAGAGCGAGAGTGTGGTGTCGGTGGAAACTTCGAACCTATTTCACGAAGAACCGGAGTCGGTTGCGAAGGTGAGTGACCGAACCGGTGAGAATGGTGGTGAAATTGGTTTGGAATTGACTCTTGGATTCGAACCGTTTTCACGTGCGTATCACGTGGTTCCCGTGAAGAAGAGAAGGATAATTGAGTTGAAGAGTTGTGGCGACTCGGCTGAGAAAGAGTCGTGTAAGACGGAGCTGGGGCTCGAGTACTCGGCTTGA 870 0.5402 MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEAATNGQGPPLKAYDIRHVSRNDNSANQTQKAKTRSRFKRTGGTLIKPKASKGTGFVPTEPEANRTASHESALSHLSEAAAMVEGERESKESESVVSVETSNLFHEEPESVAKVSDRTGENGGEIGLELTLGFEPFSRAYHVVPVKKRRIIELKSCGDSAEKESCKTELGLEYSA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0576 289 MobiDBLite consensus disorder prediction 163 187 - -
Ssu9g0576 289 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Ssu9g0576 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 286 - -
Ssu9g0576 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 286 - -
Ssu9g0576 289 PIRSF AS2 1 289 IPR017414 -
Ssu9g0576 289 MobiDBLite consensus disorder prediction 213 233 - -
Ssu9g0576 289 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0576 Ssu-Chr9 27069098 27070782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0576 1 285 AS2 family AT3G02550 63.699 4.66e-117 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu9g0576 LOB 8.5e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0576 9 27069098 27070782 Ssu9g0576 9 27069098 27070782 ECH
Ssu3g0064 3 1296423 1297483 Ssu9g0576 9 27069098 27070782 ECH
Ssu7g0316 7 5320296 5321278 Ssu9g0576 9 27069098 27070782 ECH