Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0382 ATGAGTAGTGATGGAGACATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCTGTTACCGGAATGTCAGATTCCAGCGAGTTCTCAAATGGGGTGTCAGATTCAGGCCAACTCTGCAACCATGaatgcTTGCAGTGGCTTAAAGAAAACAGAAGTTGAAATGCCTTGTGCTGAAAACTGTGAGCAACCAGAGAATTTTTCTGATTTAAGGGATAGCAAACAAGGGTCCCTACATAATAATGTGAAGGAAAATGGGTCAAAAGTAAATACCAAGCCTGTGGAAGATAACATGGAGTGTAGCAGTACAGatcaagataaaattttcaagaaaccaGACAAGATTCTTCACTGTCCCCGATGCAACAGTTTGGACACTAAATTCTGTTATTTCAATAACTACAATGTCAATCAACCTAGGCATTTCTGCAAGAATTGTCAAAGGTATTGGACTGCCGGGGGAACAATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGGTTCTCAATACCGGCACATTATTGTAGCTTCTGATGGAATTCCAACTGCCAGGTTCGAAACCAACGACTCCTCTCATCACCAACTTGTGTCAACTCTTGAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTACTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTAAATCCATGGAGTCAATGCTTAAacttaaagaacaaaaaagaagtgTTGATGCAAACTCTGTCGATTGTGCAGAAAATGGGGAGGAGGAAGTCTCCTTATGTGGATCATCTGTGACCAATGCTTGCAATCCAAGAAACAAATTGTCAGAACATAATGCATCAAAACTTTTGCAGTGTTACACCGTTCCTCCATGGATATTCCCTTGGAATCCAGGTTGGAACAATGTTGCTTCCATGGCAGCAGTTCACCCTTCTTCACTGCACATGTGTAACCCTTATAGTGCTGACCCCGCTTCAATGCAGTGGTGTCCCACGCCGATGGTGGCCATTCCAACCATCTGCCCACCAAGCTTTCCTTTGCAATTTGTTCCTGGATCGTACTGGGGTGGACCACCTGTGTGGGGTGCTGCATCAGGAGCAGTTTCAATGGGTTTCAATGGTTGCCTTTCACCCACTTCCTCTACTAGTAACAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGAAAACACACTAGAGATACTGTTTTAACAGATGAAGAGAAATCAGAAATGTGTATTTTGGTTCCAAAGACCCTTAGAATTGATGATCCTAATGAGGCCTCAAAATGTCCTATATGGGCAACATTAGGAATCAAGCCTGATAACCAGCAATCTGTATCAGAAGATGCAATTTCCAAAAGGGCAAAGCCTAAAGAAGGCAAAGACCGTGTGTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAAGAGAGCATATAA 1488 0.4274 MSSDGDMSNKDPGIRLFGRKILLPECQIPASSQMGCQIQANSATMNACSGLKKTEVEMPCAENCEQPENFSDLRDSKQGSLHNNVKENGSKVNTKPVEDNMECSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLGSQYRHIIVASDGIPTARFETNDSSHHQLVSTLESAAVFRSSTDNGTVLKFGPDAPPLCKSMESMLKLKEQKRSVDANSVDCAENGEEEVSLCGSSVTNACNPRNKLSEHNASKLLQCYTVPPWIFPWNPGWNNVASMAAVHPSSLHMCNPYSADPASMQWCPTPMVAIPTICPPSFPLQFVPGSYWGGPPVWGAASGAVSMGFNGCLSPTSSTSNSCCSGNGSPTLGKHTRDTVLTDEEKSEMCILVPKTLRIDDPNEASKCPIWATLGIKPDNQQSVSEDAISKRAKPKEGKDRVLGVSQILEANPAAISRAHAFQESI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0382 495 MobiDBLite consensus disorder prediction 77 101 - -
Ssu9g0382 495 Pfam Dof domain, zinc finger 116 173 IPR003851 GO:0003677|GO:0006355
Ssu9g0382 495 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Ssu9g0382 495 PANTHER CYCLIC DOF FACTOR 3-LIKE 7 494 - -
Ssu9g0382 495 PANTHER CYCLIC DOF FACTOR 2 7 494 IPR045174 GO:0003700|GO:0006355
Ssu9g0382 495 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0382 Ssu-Chr9 18806561 18809350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0382 11 494 C2C2-Dof Transcription Factor Family AT5G39660 34.463 8.81e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu9g0382 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0382 - - ccaj:109792807 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1709 4 30104819 30107338 Ssu9g0382 9 18806561 18809350 PCT