Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0304 ATGAGTACCAACGAATTTATTAATAGCCGGGATCCATCTCAGGCTGCACAAGGCAATAATGACATCAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCTTGGGGCAAATGGGCAGCTGAAATAAGAGACCCTAACAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGCTGCAGCTGCTGCCTACGATGCTGCGGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAACGCGTTGCTCAACCATTACCACCGACCAACGCTGGCGCTTCTTCAGCTTCTGCACAACCCTCTTCTCTTCCACCAGCCCACGTTGGTGACCAAAGTCTACAACCTACCAACGCTTCTTTTGCGGTGTCATCATCATCAGAGGAAGGGTTTCCAAATCTGAACGAGTATGCGCAGTTGCTGCGTTGTAGGGATGATGATGATTTCCGTCGCGTTGCGTCGGGGCTTTACCATCAGCATCCCAATGAGGATTTTATTTATGgttcatcaccaccaccaccggtgCCATTTTTTGTGTCTTCATCTTCAGCAATGCCGTCCTCAACTTCTGAGGGAGATTATGGTTCATACGGTTTTTTGAATGAAAGGGGGAGTGGTTTTGATCATGAAGGGAACACGAGGGGGTCATAG 660 0.4652 MSTNEFINSRDPSQAAQGNNDIRKKHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEAAAAAYDAAALKFKGNKAKLNFPERVAQPLPPTNAGASSASAQPSSLPPAHVGDQSLQPTNASFAVSSSSEEGFPNLNEYAQLLRCRDDDDFRRVASGLYHQHPNEDFIYGSSPPPPVPFFVSSSSAMPSSTSEGDYGSYGFLNERGSGFDHEGNTRGS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0304 219 MobiDBLite consensus disorder prediction 1 30 - -
Ssu9g0304 219 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Ssu9g0304 219 MobiDBLite consensus disorder prediction 1 20 - -
Ssu9g0304 219 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Ssu9g0304 219 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Ssu9g0304 219 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Ssu9g0304 219 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Ssu9g0304 219 PANTHER DNA-BINDING DOMAIN 2 197 IPR044808 GO:0003700|GO:0009873
Ssu9g0304 219 MobiDBLite consensus disorder prediction 86 117 - -
Ssu9g0304 219 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Ssu9g0304 219 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Ssu9g0304 219 MobiDBLite consensus disorder prediction 185 219 - -
Ssu9g0304 219 MobiDBLite consensus disorder prediction 92 117 - -
Ssu9g0304 219 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 2 197 - -
Ssu9g0304 219 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0304 Ssu-Chr9 15286486 15287971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0304 8 86 AP2-EREBP Transcription Factor Family AT5G61890 74.699 1.20e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu9g0304 AP2 2.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0304 9 15286486 15287971 Ssu4g1841 4 33588940 33598925 PCT