Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1848 ATGTCTTCCTTCAAATCCTACGGGAAAGTTGACGAGCATGAGCAAATGGGGTTGGACGCAAGGAGGAAAACCCGCAAGAGAATCACAATCATAGGCCGGTACTCAATAGTCCTAGCAGGTGTTGTGTTCGCTGCTGTGTTTGGCATTGTCAGCTCCACTCGTGACAACTCACAAGGTGCCAATGATGCTCACTCTGTGACCAATTCAGTGAGGGCCGTTTGTGATGTGACTTTGTACAAGGACTCGTGCTATAGCAGCCTTGGTTCTGCTGTGGACTCGGGGAAGGTTCAGCCCGAGGAGTTGTTCATGTTGTCAATGAAGGTGACCTTGTCTGAACTGTCCAAAGCTGTTGAGTATTTCAATGATGATCAGCATGGAGTTTTCAAAGGGTTGAAGGATAGCAGGACTAAGGAGGCTCTGAAAAATTGCAGGGAGCTTTTGGGTCTTGCGGTTGACCACTTCAATAGCTCTTTGACATCCGGGGAAAAGTCTTCCCTTCTTGAGGTTTTTGAGGATCTTGAAACATGGTTAAGCGCTGCAgGTACATACCAGCAGACTTGCATTGAAGGCTTTGAAAATGCAAAAGAAGCACTTAAGGCAAGTGTAGTAAGCTATCTTAAAAATTCTACACAGTTCACTAGTAACAGTCTTGCCATCATTACCTGGATTAACAAGGCCGCAACCACACTGAACTTGCGGCGCTTACTGAGTTTACCTCATCAGAATGAAGCACCAGAATGGCTTCATTCAAAAGATAGGAAGCTGCTTCTAACAGaggatttgaagaaaaaagctgACATTGTTGTGGCCAAAGATGGCAGTgggaaatataaaaagatttctGATGCACTTAAACATGTCCCTAATAAGAGTGACAAGAGGACTGTGATCTATGTGAAGAAAGGGCTTTACTATGAAAATGTGAGGGTAGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGTATGACTTCTACTGTTGTATCTGGCAGCCTTAACTTTGTGGATGGCACACCAACATTTTCAACAGCAACATTTGGTAAGTAA 1050 0.4276 MSSFKSYGKVDEHEQMGLDARRKTRKRITIIGRYSIVLAGVVFAAVFGIVSSTRDNSQGANDAHSVTNSVRAVCDVTLYKDSCYSSLGSAVDSGKVQPEELFMLSMKVTLSELSKAVEYFNDDQHGVFKGLKDSRTKEALKNCRELLGLAVDHFNSSLTSGEKSSLLEVFEDLETWLSAAGTYQQTCIEGFENAKEALKASVVSYLKNSTQFTSNSLAIITWINKAATTLNLRRLLSLPHQNEAPEWLHSKDRKLLLTEDLKKKADIVVAKDGSGKYKKISDALKHVPNKSDKRTVIYVKKGLYYENVRVEKTKWNVMMIGDGMTSTVVSGSLNFVDGTPTFSTATFGK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1848 349 Pfam Pectinesterase 266 348 IPR000070 GO:0030599|GO:0042545
Ssu8g1848 349 SMART PMEI_2 65 219 IPR006501 GO:0004857
Ssu8g1848 349 PANTHER PECTINESTERASE 5 347 - -
Ssu8g1848 349 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 223 IPR035513 -
Ssu8g1848 349 CDD PMEI-like_3 72 225 - -
Ssu8g1848 349 Pfam Plant invertase/pectin methylesterase inhibitor 69 219 IPR006501 GO:0004857
Ssu8g1848 349 Gene3D - 261 348 IPR012334 -
Ssu8g1848 349 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 224 IPR035513 -
Ssu8g1848 349 SUPERFAMILY Pectin lyase-like 264 347 IPR011050 -
Ssu8g1848 349 PANTHER PECTINESTERASE 5 347 - -
Ssu8g1848 349 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 223 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1848 Ssu-Chr8 48123156 48125016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1848 1 348 Carbohydrate Esterase AT3G10710 48.580 1.09e-106 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1848 8 48123156 48125016 Ssu2g0350 2 22448431 22451539 PCT