Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1847 ATGAGTTCTTTGGGTGATCATAACATAGCTGGCGCTTTTTTGGACCCTTCAATGAGAAGCACTGAACAAGAGAGAAGGGTTCACGAAGAGAATGGCAAAGAAGTACAGATAACGATTGAGGAACTTGAGACAAGGATGTGGAGGGACCGCATGCTGCTGAGGAAGCTTAAGGATGAGAGgagggagaaagagaaaggtCAAACGTTGGAGATGCTGAAGAAGAAGGCCATGACTCGTGCACAAGACACTGTGCTGAAGAACATGCTCAAGATGATGGAGGTTTGTGACATTCGGGGTTTCGTTTATGGCATCATTCCTGAGAAGGGGAAGCCAGTGAGTGGAGCTTCTGATAACCTTCGGGGTTGGTGGAAGGACAGGGTCAGGTTCGACCGTAATGGTCCTGCCGCAATTCTCAGGTATGATGAAGAAAGTGGATTTGAGGACCTGATTAATGATCCATTCAATGGAGACCCATCAGCAGCATATGCCTTGAGTGATCTCCCTGACACAACTCTTGGGTCACTCTTGTCATGTCTGATGCAGCACTGTGATCCCCCCCAGAGGAGGTACCCTTTAGACAAGGGTGTTTCCCCTCCCTGGTGGCCCACTGGGCAGGAGTTGTGGTGGCCCGAGTTGGGCTTTTCCGTGGACCCAGGCCCACCTCCCTACAAGAAGCCCCATGACCTGAAGAAGGTTTGGAAGATGTGTGTGCTCACTGCAGTGATCAAGCACATGTCCCCTGACATCACAAAAATCAAGAACATTGTGCGCCACTCAAGGACCCTGCAGGACAAGCTCACTGCCAAGGAAACTGCTATTTGGACTGCTATAGTTAAACGTGAGGAGTCAGTTGCCAGAAGAATGCACCCTCACTTGTTTTCAACCCCACCAGTGAGAAGGCCTAATGTGATCATGGAAGAAAGTGGTGGTGCTAGAAATTTTCTTGGAGGCCAAAATAACCCACCACCAACCACCAATGTtgctcataataataacaataataatatactcCTAGCAAATGGTGGTGCTAGGAATTTTCTGCGGGGGCAAAATAACTCACCACCAACCTCCATTGTTACTAATGGTGGTGCTAGAAATTTTCTTGGGGGGCAAAATAACCCACCTCCAACCTCCAATGTTATTAATGGTGGTGGTGTTAGAAATTTTCTGAGGGGGCCAAAAAATTTTCTGGGGGGGCAAAATAACCTCCCACCAACCACAAATGTTGCTAATggtaatgacaataataatatggTTCCAATGAACAATGGCCTTGTCGTGCCACCAGATCATGCTGCAAATAAGAGAAAGGCAGGGGTTGTTCAAGGTATAACAATTCCCCATGAGGCCTATTCCTGCCATAACCCTCAGTGCCCCTATCATGAGCCCAGCTTTGGGTTCATTGACAGGAATGCGAGGAACAATCATCAGTTGACATGCAAATACAAAGGCCAAAACCCTGTGCAAGTGGTTGTTGGAGGGTCAAAGTCTTCTCAGCTTGGTAGTGGCAATCCCAATGTTAATGTGCCTCTTGGTCAATCTAGGCACACTGCAGCAGTACCAGTTGTGAATCAAAATCAGACTCTTACTATTGGTCAACCTAGGTACACTGCTACACCAGTTGTGAATCAAAATCAGACTCTTACTATTATCAGTGACAATTCTGGAGAAACGGGGTCTGATTTGATACACAACGTGAATGTTCAGCAGAAGAAATCCACAGGTGCTGCCAACAACATGAATGTTCCTCTAGCAAGCCAAAACCAGCAGGTGCAAAATGTTCAGCCTCAAGTGGACAAGAATTGCTTTGGTCATGAAGTGTCCAATGCCCCAGTGCATGGAAATTTGTCAACATCCATAGATCCTACCTATGAATGGGATGCAAATAATTCCCAATCTGATGGTTCTTCATTCAACTATACAGTTATGGACTCTCCTTTGTTGACAACACCGGGCCAGGATTACCTTTGGCTATACACTTAA 1983 0.4523 MSSLGDHNIAGAFLDPSMRSTEQERRVHEENGKEVQITIEELETRMWRDRMLLRKLKDERREKEKGQTLEMLKKKAMTRAQDTVLKNMLKMMEVCDIRGFVYGIIPEKGKPVSGASDNLRGWWKDRVRFDRNGPAAILRYDEESGFEDLINDPFNGDPSAAYALSDLPDTTLGSLLSCLMQHCDPPQRRYPLDKGVSPPWWPTGQELWWPELGFSVDPGPPPYKKPHDLKKVWKMCVLTAVIKHMSPDITKIKNIVRHSRTLQDKLTAKETAIWTAIVKREESVARRMHPHLFSTPPVRRPNVIMEESGGARNFLGGQNNPPPTTNVAHNNNNNNILLANGGARNFLRGQNNSPPTSIVTNGGARNFLGGQNNPPPTSNVINGGGVRNFLRGPKNFLGGQNNLPPTTNVANGNDNNNMVPMNNGLVVPPDHAANKRKAGVVQGITIPHEAYSCHNPQCPYHEPSFGFIDRNARNNHQLTCKYKGQNPVQVVVGGSKSSQLGSGNPNVNVPLGQSRHTAAVPVVNQNQTLTIGQPRYTATPVVNQNQTLTIISDNSGETGSDLIHNVNVQQKKSTGAANNMNVPLASQNQQVQNVQPQVDKNCFGHEVSNAPVHGNLSTSIDPTYEWDANNSQSDGSSFNYTVMDSPLLTTPGQDYLWLYT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1847 660 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 21 606 IPR006957 GO:0005634
Ssu8g1847 660 Coils Coil 25 59 - -
Ssu8g1847 660 Pfam Ethylene insensitive 3 40 282 IPR006957 GO:0005634
Ssu8g1847 660 Gene3D - 67 140 IPR023278 GO:0003700|GO:0005634
Ssu8g1847 660 SUPERFAMILY DNA-binding domain of EIN3-like 162 285 IPR023278 GO:0003700|GO:0005634
Ssu8g1847 660 MobiDBLite consensus disorder prediction 1 32 - -
Ssu8g1847 660 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 21 606 - -
Ssu8g1847 660 Gene3D - 159 292 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1847 Ssu-Chr8 48094002 48097312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1847 450 496 EIL Transcription Factor Family AT2G27050 40.426 5.45e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Ssu8g1847 EIN3 3e-108 No_clan