Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1841 ATGATGGAAGAAGGGTTAGGGCATAACTCAGTTCCTCCTCCAGGTTCCATTGACAAGTCTAGGATTCTGGATGTTAAACCTCTGAGGAGTTTGATTCCTATTTTCTCAATGTCTTCTCAAGCTCCACCCTCTCCCCAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGCACCTCAGCAAACTCCAGCTGGGGGGACAGCAAGGGGTGCTGCCATACCTGCTCCAATAAGGGCATATAGGAGCCCACTAGGGGCAGGAGACACTGGTTCAACAATGGAGGGATTCAATGATCAAGATACTTCTGGGAAGAAAAAACGTGGATCGCCGCAATTGCGCCGCGCCAAATCATCCACAGATAAGCCTAAGAAAAGTTTAGAACTGAATGTTGATTTAAGTGCTTTAGTTGGTATTAGCCCGGCCCAAAGAGACGATGGTAGCCGCGAAGTGGTTAATCTTGTGCTTATGTTGTTCGATGCGCTTCGAAGAAGGCTCTGCCAACTTGAAGAGGCCAAGGAATTGAGCTCGGGTTCGATCAAGCGTGCAGATTTGAAAGCTTGTAATACTTTGATGACCAAAGGAATTCGAACTAACATGAGGAAGAGAATAGGAGCAGTTCCTGGGGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAATTGTGTATTGTGGGTTTGCATGCTCCCTCCATGGGTGGAATTGATGCCTTGCATATCAGGGGTGAGTTTGAGGAGGAAACTCTGGCCGTGAGCATTGTTTCATCTGGAGAATATGATGATGATGCCGAGGATAGTGATGTTATTATTTATACTGGTCAGGGAGGGAACTTCTTCAAGAAAGATAAGCACGCGATTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGGAGTTCACGACAACACAATGAAGTAAGAGTCATCCGAGGCATGAGAGATGGTGTGAATCCAAATGCAAAAATCTATGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGATAGAAAAAGCAAAAGGTGGCGGTGGTGTATTTAAGTATAAGTTGGTAAGAATGCCGGGACAGCCTAGTGCTTTTGCTGTTTGGAAATCAGTTCAGAAATGGAAATCTGGCTCCCCTGCAAGGACTGGACTTATTCTTGCAGACATTTCCAATGGAGCTGAGAGTATTCCTGTGTCACTTGTCAATGAGGTTGATCATGTGAAGGCGCCtgctttttcaattatttccatTCTCTTAGACATCCAAAATCATTCAGTTTAA 1269 0.4389 MMEEGLGHNSVPPPGSIDKSRILDVKPLRSLIPIFSMSSQAPPSPQYPSGFSPFFPFGAPQQTPAGGTARGAAIPAPIRAYRSPLGAGDTGSTMEGFNDQDTSGKKKRGSPQLRRAKSSTDKPKKSLELNVDLSALVGISPAQRDDGSREVVNLVLMLFDALRRRLCQLEEAKELSSGSIKRADLKACNTLMTKGIRTNMRKRIGAVPGVEIGDIFFFRMELCIVGLHAPSMGGIDALHIRGEFEEETLAVSIVSSGEYDDDAEDSDVIIYTGQGGNFFKKDKHAIDQKLQRGNLALDRSSRQHNEVRVIRGMRDGVNPNAKIYVYDGLYKIQDSWIEKAKGGGGVFKYKLVRMPGQPSAFAVWKSVQKWKSGSPARTGLILADISNGAESIPVSLVNEVDHVKAPAFSIISILLDIQNHSV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1841 422 SMART G9a_1 200 357 IPR003105 -
Ssu8g1841 422 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 15 408 - -
Ssu8g1841 422 MobiDBLite consensus disorder prediction 1 20 - -
Ssu8g1841 422 SUPERFAMILY PUA domain-like 187 374 IPR015947 -
Ssu8g1841 422 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 408 - -
Ssu8g1841 422 Gene3D - 187 373 IPR036987 -
Ssu8g1841 422 Pfam SAD/SRA domain 204 357 IPR003105 -
Ssu8g1841 422 ProSiteProfiles YDG domain profile. 205 353 IPR003105 -
Ssu8g1841 422 MobiDBLite consensus disorder prediction 81 124 - -
Ssu8g1841 422 MobiDBLite consensus disorder prediction 100 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1841 Ssu-Chr8 47828322 47829590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1841 7 408 Su(var)3-9 homologs AT1G73100 48.585 8.88e-124 372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1841 8 47828322 47829590 Ssu2g0344 2 22113416 22115053 PCT