Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1644 ATGTCTCCACAAAGTGTAGCTCTTTCACTTTTCATCACCATGTTTGTCTCATTTGGGGTGTGTTTTGGCTCTTACCTAGAGGACACATACCATCTAACTAATTATCAACGTTACTCaattaaaccaaataatgaACATTTTGGTATCATGACAAGGGCTTATGGATCTACCCCATATACAAGGTTTCAAGGAAGGATTAATGTTGATGACTATGGAGCCAAAGCTAATGATGGAAGAGATGACACTGAGgCATTTGAGAAGGCATGGAATGAGGCATGTTCTACAGGGGGTGTTCTTGTAGTCCCTGAAGAAAAGATCTATCATTTAAAGCCAATCATTTTTTCTGGACCATGCCAACCCAATACTGCCTTCACGGTCTATGGAACAATCAAAGCATGGCCTAAAATGTCAGCATACGAAAAAGATAGACAACTCTGGATTATGTTTGATAATGTCACAAATCTCAGAGTGGATGGTGGTGGCACTATCAATGGCAATGGGAGAAAATGGTGGGAGAACTCTTGCAAAACCAATGAAAGCCTTGCCGTGACTTTCTATGAATGCAACAATTTGAGAGTGACAAACCTGAGGTTAAAAAATGCACAGCAAATGCATGTAAGGTTTCAGAAATGCAACAATGTTACAGCTTCGAATTTGATCATCGGAGCACCAGGGAACAGCCCTAACACTGACGGAATTCACGTCACAGAgacacaaaatattatcataagcAATAGTATCATTGGGACAGgtgaaaaccaaaatcaacacaaaattagaaaaattcacttgaattttaaaatttctaatttgctTTTCTCACTGTTTATTGAAGGTGATGACTGTATTTCCATAGTAAATGGGTCCCAAAATGTTCGAGTCACGGATGTCACGTGTGGACCAGGGCATGGAATCAGCGTTGGAAGCTTAGGAGCTGGTAACTCAGAAGCTCAAGTCTCCAATGTGTTTGTGAACAGAGCCACCTTAACAGGAACGACAAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCGAGAAACATCAAATTTGTGAATATAGCAATGCGAAATGTGACGAATCCCATAATTGTAGATCAAAACTACTGTGACCAGGACGAGCCATGCCATGAGCAGGATTCAGCAGTGCAACTGAGCAACATTGCGTACCAAAACATTAGAGGAACAAGTGCTTCAGAAGTGGCAATCAAATTTGACTGCAGCAAAACCGTCCCATGCAAAGGAATATACTTGCAAGATGTGAATTTAACACCAGAAGGCGATGGTAGCATCATTGCTACAtgtgaaaatgttagatatgtCAATCGGGGAAAGTTTTATCCTCCATGCTCTACTTGA 1365 0.3832 MSPQSVALSLFITMFVSFGVCFGSYLEDTYHLTNYQRYSIKPNNEHFGIMTRAYGSTPYTRFQGRINVDDYGAKANDGRDDTEAFEKAWNEACSTGGVLVVPEEKIYHLKPIIFSGPCQPNTAFTVYGTIKAWPKMSAYEKDRQLWIMFDNVTNLRVDGGGTINGNGRKWWENSCKTNESLAVTFYECNNLRVTNLRLKNAQQMHVRFQKCNNVTASNLIIGAPGNSPNTDGIHVTETQNIIISNSIIGTGENQNQHKIRKIHLNFKISNLLFSLFIEGDDCISIVNGSQNVRVTDVTCGPGHGISVGSLGAGNSEAQVSNVFVNRATLTGTTNGVRIKTWQGGSGYARNIKFVNIAMRNVTNPIIVDQNYCDQDEPCHEQDSAVQLSNIAYQNIRGTSASEVAIKFDCSKTVPCKGIYLQDVNLTPEGDGSIIATCENVRYVNRGKFYPPCST 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1644 454 ProSitePatterns Polygalacturonase active site. 296 309 IPR000743 GO:0004650|GO:0005975
Ssu8g1644 454 PANTHER POLYGALACTURONASE 278 453 - -
Ssu8g1644 454 SUPERFAMILY Pectin lyase-like 61 453 IPR011050 -
Ssu8g1644 454 Pfam Glycosyl hydrolases family 28 99 252 IPR000743 GO:0004650|GO:0005975
Ssu8g1644 454 Pfam Glycosyl hydrolases family 28 278 441 IPR000743 GO:0004650|GO:0005975
Ssu8g1644 454 PANTHER - 9 253 - -
Ssu8g1644 454 PANTHER - 278 453 - -
Ssu8g1644 454 PANTHER POLYGALACTURONASE 9 253 - -
Ssu8g1644 454 Gene3D - 56 448 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1644 Ssu-Chr8 37565616 37569404 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3211 3 88210595 88213876 Ssu8g1644 8 37565616 37569404 PCT
Ssu2g0184 2 10880864 10882464 Ssu8g1644 8 37565616 37569404 PCT