Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1639 ATGATGGAGTCAGAAGGAGAAGCTGGGGCAAAGCCGATGAATGCATTGGGCGGCCGAGTCTGCCAGATCTGTGGTGATAATATTGGGAACACCATGGATGGCGATCCGTTCATTGCTTGTGATGTTTGTGCTTTCCCTGTCTGCAGGCCGTGCTATGAATATGAAAGGAAGGATGGAAATCAGTCTTGTCCTCAGTGCAAGACCCGGTACAAGAGGCACAAAGGTAGTCCTGCAATTCTTGGAGACCGGGAAGAGGATGGGGGTGCCGATGATGGTGCAAGTGACTTCAATTACAATTCAGAAAACCAGAACCAAAAACAGAAGATTGCAGAGCGCATGTTGGGCTGGCAAATGGCATATGGGCGAGCGGAGGAGGTTGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAATCACATTCCTCTGCTCTCCAGTGGACAAGAGGTGTCTGGAGAATTATCTGCAGCCTCACCTGAGAGGCTGTCAATGGCATCTCCAGGAGGTGGCCGTGGGAAGCGTGTCCAGAATCTTCAATATTCATCTGATATTAATCAATCACCAAATATTAGGGTCGGGGATCCTGGATTGGGCAACGTGGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAGCAAGATAAGAATGTTGCTCCAATGAGCACAGGCCAAGCTACTTCTGAAAGAGGAGTTGGAGATATTGATGCTAGTACTGATGTGCTTGTGGACGATTCCTTGTTGAATGATGAGGCTCGGCAACCTCTCTCCAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCATACCGCATGGTCATTGCTCTGCGGCTTATTATCCTATGCATTTTTCTGCATTATCGAATAACAAATCCTGTGCCCAATGCATATGCATTGTGGTTGATATCAGTTATATGTGAGATTTGGTTTGCCATATCTTGGATATTGGATCAATTCCCCAAGTGGCTCCCTGTGAACCGTGAAACATATCTTGACAGACTTGCACTAAGATATGATCGGGAAGGGGAACCATCACAGCTAGCAGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAAGAGCCCCCTCTTGTGACTGCTAACACTGTACTATCTATTCTTGCTGTTGACTACCCCGTGGATAAGGTCTCCTGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTTGAAGCACTGGCTGAGACGTCAGAATTTGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATAACATTGAACCCCGGGCACCTGAGTGGTATTTTGCACAGAAGATTGACTACTTGAAAGACAAGGTTCAACCATCATTTGTCAAAGATCGTAGAGCAATGAAGAGAGAATatgaagaatttaaaattcgTGTCAATGGACTTGTTGCGAAGGCACAAAAGGTTCCTGAAGAAGGATGGGTGATGCAAGATGGTACGCCATGGCCTGGAAACAACACTAGAGACCATCCAGGAATGATTCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGATACTGAGGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGGTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGAGTGTCAGCGGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTAGGGAAAAATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGGAATGATCGATATGCTAATCGTAATACTGTTTTCTTTGATATAAATTTGAGAGGTTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACTGGATGTGTCTTCAACAGAACAGCTTTATATGGTTATGAACCTCCTATTAAACCCAAGCATAAAAAGCCTGGGTTGCTTTCTTCACTTTGTGGTGGTAATCGAAAGAAGAGCTCAAAATCTAGCAAGAAAGGCTCAGACAAGAAAAAATCTAGCAAGCATGTTGACCCAACTGTGCCCATCTTCAGCCTTGAGGATATAGAAGAAGGGGTGGAAGGTGCTGGATTTGACGATGAGAAGTCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGCCAGTCTGCTGTCTTTGTTGCCTCTACACTCATGGAAAATGGTGGCGTTCCTCAGTCTGCAACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGTTGTGGTTATGAGGATAAAACAGAATGGGGAAGTGAGATAGGATGGATCTATGGTTCTGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGCGGTTGGAGGTCTATATACTGCATGCCAAAGCTCCCAGCATTTAAAGGTTCTGCTCCTATCAATCTTTCAGATCGTCTGAACCAAGTGCTTCGTTGGGCTTTAGGTTCGGTGGAAATTCTTCTAAGTCGACACTGTCCCATCTGGTATGGTTATAGTGGAAGGCTAAAGTGGCTCGAGAGATTCGCATATGTGAACACCACAATCTATCCAATCACTTCCATTCCCCTTCTCATGTATTGTACCTTACCTGCTGTCTGTCTCCTGACTAACAAGTTCATTATTCCACAGATTAGTAACATTGCAAGTATATggtttatctctctctttctttccatCTTCGCCACCGGCATCCTTGAGATGAGGTGGAGTGGTGTTGGAATCGATGAGTGGTGGAGAAATGAACAATTTTGGGTTATTGGTGGGGTTTCGGCCCATCTTTTTGCCGTGTTCCAAGGTTTACTCAAAGTACTTGCTGGAATTGACACTAACTTCACTGTTACCTCAAAGGCATCAGATGAGGATGGAGACTTTGCAGAACTCTACATGTTCAAATGGACAACCCTTCTCATCCCACCCACAACACTTCTCATCATAAACCTGGTGGGGGTTGTTGCAGGTATCTCCTATGCCATCAACAGTGGCTACCAGTCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTGATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGACGCCAGAACAGAACACCAACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGTTGTGGGTCCGAATCGACCCCTTTACAACAAGAGTCACCGGTCCTGATGTTGAGCTGTGTGGAATCAACTGCTAG 3231 0.4423 MMESEGEAGAKPMNALGGRVCQICGDNIGNTMDGDPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDREEDGGADDGASDFNYNSENQNQKQKIAERMLGWQMAYGRAEEVGAPNYDKEVSHNHIPLLSSGQEVSGELSAASPERLSMASPGGGRGKRVQNLQYSSDINQSPNIRVGDPGLGNVAWKERVDGWKMKQDKNVAPMSTGQATSERGVGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIALRLIILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVAKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGLLSSLCGGNRKKSSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYVNTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVELCGINC 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1639 1076 ProSiteProfiles Zinc finger RING-type profile. 21 67 IPR001841 -
Ssu8g1639 1076 SUPERFAMILY Nucleotide-diphospho-sugar transferases 362 889 IPR029044 -
Ssu8g1639 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 96 IPR013083 -
Ssu8g1639 1076 PANTHER CELLULOSE SYNTHASE 3 1076 - -
Ssu8g1639 1076 MobiDBLite consensus disorder prediction 74 104 - -
Ssu8g1639 1076 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 469 639 IPR029044 -
Ssu8g1639 1076 Pfam Cellulose synthase 348 1070 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu8g1639 1076 Pfam Zinc-binding RING-finger 11 86 IPR027934 -
Ssu8g1639 1076 SUPERFAMILY RING/U-box 6 88 - -
Ssu8g1639 1076 CDD mRING-HC-C4C4_CesA_plant 19 69 - -
Ssu8g1639 1076 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1076 - -
Ssu8g1639 1076 MobiDBLite consensus disorder prediction 152 172 - -
Ssu8g1639 1076 MobiDBLite consensus disorder prediction 648 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1639 Ssu-Chr8 37323348 37330467 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1639 8 37323348 37330467 Ssu8g1639 8 37323348 37330467 ECH
Ssu2g0053 2 5150190 5156963 Ssu8g1639 8 37323348 37330467 PCT