Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1638 ATGTGCGGTGGTCCAGAGAAATCAAAATCTCTTTCAACTCCATCTTCATCTGCGGTAGAAGGTTCAACTAACGTCAAAGACATGAAAAATCTTACTGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAAtgattttgaagattttaaGCAAGTATTAGATAGGGATGCTTCTCTAATAAATGAAGTTGGTGTCTGGTACGTCCGCCAAATTGGATCCAAACAAGTTGTTCTTGAGCACAGAACTCCTTTGATGGTTGCTGCTACCTATGGGAGTATAGATGTTCTAAAACTTGTACTCTCATGTCCAGAGGCTGATGTAAATTTCTCCTGCGGGACAGATAAAAGCACTGCCCTTCACTGTGCTGCATCAGGTGGTTCTGTTAATGCAGTTGATGTTGTAAAATTGCTCTTGTCAGCTGGTGCTGATATCAATTGTGTGGATGCTCATGGAAATCGTCCCGTTGATGTTATTGTTGTTCCTCCTAAGCTTGAAGGTGTGAAAGCAACTCTTGAAGATCTACTTTCAGATAGTGCTTCTGATGGGTGTGTTGGTGACTGTTCTATTCCAGTATCTGTTAATTCATCAAGTCCTGATTCAGCTGCTCATTTATCATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCAAAGTTTACTGATACAGCTGTTAATTCTACTTCAGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAGAACAGCATTTATGCAACAGATGAGTTTCGTATGTTTTCATTCAAGGTGCGTCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCACCCCGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTATAGCTGTGTGCCATGCCCTGATTTTAGGAAGGGGGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCCCAATATAGGACAAGGCTGTGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGTTTTTTCGCTCACACAGCAGAAGAGCTGCGTCCATTGTATGTGTCTACTGGATCTGCTGTTCCTTCACCCCGATCATCTGCCTCTACCCCTAATGTCATGGACATGGCGGCTGCAATGAGCCTCTTTCCTGGTTCGCCGTCATCAATTTCTTCCATGTCTCAATCTCCCTTTGCGCAGCCAATGTCTCCATCTACTACTGGCATTTCTCACTCATCTACTGCTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACCAGTCGATTGAGATCTTCTCTTAATGCTCGTGACATGCCACCTCAAGACTTGGATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAATGACTTGGGCTGTTTCTCGCAGCCCCGTCCTGGTGCCATTTCAGTGAGTCGATCTGGTCGGTCTAAGACACTTACTCCATCAAATCTTGATGAACTATTTTCTGCTGAAATTTCATCTCCTCGGTATTCTGACCCAGCAGTGGCTTCTGTATTTTCCCCGAGGCACAAATCAGCTATTTTGAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCGTCTCCTAGGAATGTTGAGCATCCTCTATTACAGGCTTCATTTGGTGTCTCATCCCCTGGAAGGATGTCACCAAGAAGTATGGAACCAATCTCTCCAATGAGCTCTCGATTATCAGCGTTTGCTCAGCGTGAGAAGCAGCAGCAACAGCTGCGGAGCCTTAGTTCAAGGGACCTTGGTGCCAACAATCCTGTCTCAATTATTGGGTCCCCAGTTAACTCCTGGTCTAATTGGGGATCTCCTAATGGGAATGGAAAAGTAGATTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCGCATTTGAGCTTGGAAACAATGGGGAGGAACCTGATCTATCCTGGGTTCAGTCCCTTGTCAAGGAATCTCCATCCGAGATAAAAGAGAAGTTGGCAGGTTCTGGTCCTGTTGCATCTGCTGATGGACTCAATTCCAATCCTCAAGTTGAGTCCATGGATCATTCTGTTCTAGGTGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2172 0.4429 MCGGPEKSKSLSTPSSSAVEGSTNVKDMKNLTVHTEDSFSCLLELASNNDFEDFKQVLDRDASLINEVGVWYVRQIGSKQVVLEHRTPLMVAATYGSIDVLKLVLSCPEADVNFSCGTDKSTALHCAASGGSVNAVDVVKLLLSAGADINCVDAHGNRPVDVIVVPPKLEGVKATLEDLLSDSASDGCVGDCSIPVSVNSSSPDSAAHLSSPENGLPSSPMASKFTDTAVNSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSISSMSQSPFAQPMSPSTTGISHSSTAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPQDLDVLQDFDGQQHLLNDLGCFSQPRPGAISVSRSGRSKTLTPSNLDELFSAEISSPRYSDPAVASVFSPRHKSAILNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAQREKQQQQLRSLSSRDLGANNPVSIIGSPVNSWSNWGSPNGNGKVDWSVNGNELGRLQRSSAFELGNNGEEPDLSWVQSLVKESPSEIKEKLAGSGPVASADGLNSNPQVESMDHSVLGAWLEQMQLDQLVV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1638 723 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Ssu8g1638 723 MobiDBLite consensus disorder prediction 399 428 - -
Ssu8g1638 723 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Ssu8g1638 723 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Ssu8g1638 723 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Ssu8g1638 723 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Ssu8g1638 723 SMART ANK_2a 119 151 IPR002110 GO:0005515
Ssu8g1638 723 SMART ANK_2a 84 114 IPR002110 GO:0005515
Ssu8g1638 723 SMART ANK_2a 37 67 IPR002110 GO:0005515
Ssu8g1638 723 MobiDBLite consensus disorder prediction 1 23 - -
Ssu8g1638 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Ssu8g1638 723 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Ssu8g1638 723 MobiDBLite consensus disorder prediction 8 23 - -
Ssu8g1638 723 Pfam Ankyrin repeats (3 copies) 71 153 IPR002110 GO:0005515
Ssu8g1638 723 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 22 721 - -
Ssu8g1638 723 Gene3D - 297 360 - -
Ssu8g1638 723 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Ssu8g1638 723 MobiDBLite consensus disorder prediction 203 241 - -
Ssu8g1638 723 SUPERFAMILY Ankyrin repeat 31 170 IPR036770 -
Ssu8g1638 723 MobiDBLite consensus disorder prediction 564 611 - -
Ssu8g1638 723 Gene3D - 7 207 IPR036770 -
Ssu8g1638 723 MobiDBLite consensus disorder prediction 203 238 - -
Ssu8g1638 723 PANTHER UNKEMPT FAMILY MEMBER 22 721 IPR045234 -
Ssu8g1638 723 MobiDBLite consensus disorder prediction 578 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1638 Ssu-Chr8 37266941 37269112 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu8g1638 Ank_2 4.2e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1638 8 37266941 37269112 Ssu8g1638 8 37266941 37269112 ECH
Ssu2g0056 2 5255958 5258075 Ssu8g1638 8 37266941 37269112 PCT