Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1637 ATGGACGAGAATGGTAGCTCAAGTAATGCACCCAAGAACAAGAGAAAACTGCCTCTCTCAGTTTTCTTCAAAGATGCAAGACATGTTTTCAAGATGGACTCCCTTGCCAAGGAGATACTTGGGATTGCATTCCCATCTGCATTGGCTGTTGCTGCTGATCCCATTGCTTCTCTTATAGACACAGCATTCATAGGTCACTTAGGGCCCGTAGAGCTTGCTGCTGCAGGAGTTTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCATCTTCCCTTTGGTTAGTATCACAACTTCCTTTGTGGCTGAGGAAAACACCATAGAAAAAATCAATACTGCAGCAGCAGAAAAGCAGTTCACTGAAAACATTAAGGCCAAGTCCAATGAAGTAATGCCCGATGATCATTTGCTTCAAGACATAGAGAAAGGGGCATCCAAACAGAATAATGAGACTCCAACTGAATCTTCTGCCGCAAGAGGTGACACAAACGAGCTCGTGGGAAAAGGTTGTGTACCTGAGAATGTGGAAATGGATGAATGCAATATAAATATCTTCAAGTCTACCTCTGTTACTAGTAGTAGTAACAAGAGTATGTCAAAAGCTGGAAGGAAGAAGCGACACGTTGCTTCGGCATCAACAGCACTACTTTTTGGCACAATCCTTGGTCTTCTTCAAGCTGCAACCCTTATATTTGCAGCCAAACCTCTATTAGCTGCAATGGGTCTGAAACCTGATTCTCCTATGCTAAATCCAGCTGTTAAATACTTGAGATTGAGATCCTTAGGTGCTCCTGCAGTGCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACTACAACTCCTTTATATGTTATTGTTTCGGCCTATGCATTGAATGTCGTTTTGGATCCAATACTTATCTTCTACTGCAAATTGGGCATCAGAGGTGCAGCCATTTCACATGTGCTCTCTCAGTACGTGATGGCATTGGCCCTGTTGTTGATATTAATGAGAAAAGTGGATCTCCTACCTCCAAGTATCAAGGACTTGCAGATTTTCAGGTTTCTTAAAAATGgAGGTCTGTTGTTGGCAAGAGTAGTAGCTGTGACATTCTGTCAGACTTTGGCAGCCTCATTGGCTGCAAGGTTAGGCCCAATTCCTATGGCAGCATTCCAAACCTGCCTGCAGGTGTGGCTCACATCTTCCCTTCTTGCTGATGGTTTGGCTGTTGCTGTACAGGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGATTTTGAAAAGGTGATTGTTGTTGCAACACGAACGCTGCAGATGAGTTTTATTTTAGGGGTGGGACTCTCTCTTGCAGTTGGAGTTGGATTGTACTTTGGAGCTGGAGTCTTTTCCAAAAGTGTTCTCGTTGTGCACTTAATCAGAATAGGCCTCCCgTTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTCGTCTTTGATGGTGTGAACTATGGAGCATCTGATTTTGCATATTCTGCATACTCCTTGGTCATGGTGTCACTAGCAAGTGTTGCCTCATTATTCCTTCTCTCTAAGAGCAAAGGTTTCGTTGGGATCTGGATTGCACTAGCCATCTATATGAGTCTTCGCATGTTTGCCGGCATATGGAGGATGGGAACAGCAACGGGACCTTGGCGCTTTCTCAGAGGCCGCTCAATGTCTTGA 1692 0.4409 MDENGSSSNAPKNKRKLPLSVFFKDARHVFKMDSLAKEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEENTIEKINTAAAEKQFTENIKAKSNEVMPDDHLLQDIEKGASKQNNETPTESSAARGDTNELVGKGCVPENVEMDECNINIFKSTSVTSSSNKSMSKAGRKKRHVASASTALLFGTILGLLQAATLIFAAKPLLAAMGLKPDSPMLNPAVKYLRLRSLGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSAYALNVVLDPILIFYCKLGIRGAAISHVLSQYVMALALLLILMRKVDLLPPSIKDLQIFRFLKNGGLLLARVVAVTFCQTLAASLAARLGPIPMAAFQTCLQVWLTSSLLADGLAVAVQAILACSFAEKDFEKVIVVATRTLQMSFILGVGLSLAVGVGLYFGAGVFSKSVLVVHLIRIGLPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVMVSLASVASLFLLSKSKGFVGIWIALAIYMSLRMFAGIWRMGTATGPWRFLRGRSMS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1637 563 CDD MATE_DinF_like 37 549 IPR044644 -
Ssu8g1637 563 Pfam MatE 201 302 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g1637 563 Pfam MatE 363 510 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g1637 563 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 12 561 IPR044644 -
Ssu8g1637 563 MobiDBLite consensus disorder prediction 143 160 - -
Ssu8g1637 563 PANTHER PROTEIN DETOXIFICATION 12 561 - -
Ssu8g1637 563 MobiDBLite consensus disorder prediction 143 165 - -
Ssu8g1637 563 TIGRFAM matE: MATE efflux family protein 45 529 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1637 Ssu-Chr8 37225872 37230179 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1637 8 37225872 37230179 Ssu8g1637 8 37225872 37230179 ECH
Ssu2g0058 2 5294494 5309745 Ssu8g1637 8 37225872 37230179 PCT