Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1581 ATGAGAACTAAAAGTCCTTTCCTCCTCTGTATTCTATCTCTTGCTACCACCCTTTTGGCTAGTGGCACTGGAAGTGCAACTCCAAGCGTGGAGCCAAGCCACTATGTCTCAACATTCAATAGAAGTCTTTTTCCTCCCGATTTTATATTTGGATTAGGCTCTTCCGCTTACCAGGTAGAAGGAGCATCAAATGTAGATGGCAGAGGACCGTGTATATGGGACACCTTCACTAAACAGCATCCGGAAAAGATTTGGGATCACAGCAGCGGTAACATAGGAGCTGGTTTCTATTATCATTACAAGGGTGACATAAAAGTGATGAAAGAAATTGGACTGGACTCTTTCAGATTCTCCATCTCTTGGACAAGAATATTCCCCAAGGGCAAAGGAGCCGTTAATCCCTTAGGGGTTAAATTCTACAACAATCTCATCAATGAGGTCCTATCAAATGGCTTAATACCTTTTGTTACCCTTTTTCACTGGGACTTCCCACAAGCTCTTGAAGATGAGTATGGGGGATTTCGTAGTCACAATGTAGTGGCGGATTTTCGTGCGTATGCTGACTTTTGCTTCAAGACCTTTGGAGACCGAGTCAAACATTGGGTCACTCTGAATGAACCCTTATCATATAGTCTCAATGGCTACAATGGTGGCACCTTTGCACCAGGTAGATGTTCCAAGTACGCTGGCAATTGCAGTGCTGGTGACTCAGCCACTGAACCTTACATCGTTGGCCACTACTTATTACTTGCTCATGAGGCCGCTGCCACATTGTACAAGACTAAATATCAGGCTCGTCAAAAAGGACAAATTGGGATCACCATACCGACTCACTACTTTCTGCCAAAATCTAATAGTGCCGCCGATTACAACGCTGCAAATCGAGCTTTGGACTTTGTCTTTGGTTGgtATGCTCATCCGGTTACATATGGTGACTATCCCGAGAGTATGAGATCTAATGTCGGTGCAAGACTCCCTAAATTCACAAAAGCTGAATCTGAAGGTCTCAAACGTTCCATTGATTTTCTTGGTGTGAATTATTACACCACATATTATGCAGAAAATGCTGCACCTGTCAGCGCCAACAGGACCTTCTACACAGATATATTAGCCACTCTCACTTTGCAAAAGAATGGTGTAACTCTTGGGATCCCGACTGCTTTGGATTGGCTCCATATCTATCCGAAGGGACTTCATCATCTTATGATACACGTAAAGGATAAATACAAGAATCCAAAAATTTACATCACTGAAAATGGCATTGCTGAATCAAGGAATGACTCAATACCGGTCTATGAAGCCCGCAAGGATGGTATCAGGATTAGATACCTTGATGGCCATCTTAAATTCCTTCTTCAATCGATCAAGGAAGGTGTTAATGTGAAGGGCTACTATGGATGGTCATTTTCGGACAGCTTTGAATGGGATGCTGGTTACACAGTTCGATTTGGCTACGTATTTGtggatttcaaaaataatttgagaagATACCCCAAGTTCTCTGCTTTTTGGCTGAAAAAGTTCCTTCTCAAGTGA 1536 0.4232 MRTKSPFLLCILSLATTLLASGTGSATPSVEPSHYVSTFNRSLFPPDFIFGLGSSAYQVEGASNVDGRGPCIWDTFTKQHPEKIWDHSSGNIGAGFYYHYKGDIKVMKEIGLDSFRFSISWTRIFPKGKGAVNPLGVKFYNNLINEVLSNGLIPFVTLFHWDFPQALEDEYGGFRSHNVVADFRAYADFCFKTFGDRVKHWVTLNEPLSYSLNGYNGGTFAPGRCSKYAGNCSAGDSATEPYIVGHYLLLAHEAAATLYKTKYQARQKGQIGITIPTHYFLPKSNSAADYNAANRALDFVFGWYAHPVTYGDYPESMRSNVGARLPKFTKAESEGLKRSIDFLGVNYYTTYYAENAAPVSANRTFYTDILATLTLQKNGVTLGIPTALDWLHIYPKGLHHLMIHVKDKYKNPKIYITENGIAESRNDSIPVYEARKDGIRIRYLDGHLKFLLQSIKEGVNVKGYYGWSFSDSFEWDAGYTVRFGYVFVDFKNNLRRYPKFSAFWLKKFLLK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1581 511 Gene3D Glycosidases 24 511 - -
Ssu8g1581 511 SUPERFAMILY (Trans)glycosidases 35 509 IPR017853 -
Ssu8g1581 511 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 48 62 IPR033132 -
Ssu8g1581 511 PRINTS Glycosyl hydrolase family 1 signature 339 353 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 PRINTS Glycosyl hydrolase family 1 signature 414 422 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 PRINTS Glycosyl hydrolase family 1 signature 482 494 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 PRINTS Glycosyl hydrolase family 1 signature 437 448 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 PRINTS Glycosyl hydrolase family 1 signature 458 475 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 ProSitePatterns Glycosyl hydrolases family 1 active site. 414 422 IPR018120 -
Ssu8g1581 511 Pfam Glycosyl hydrolase family 1 42 508 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 PANTHER GLYCOSYL HYDROLASE 8 510 IPR001360 GO:0004553|GO:0005975
Ssu8g1581 511 PANTHER BETA-GLUCOSIDASE 17 8 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1581 Ssu-Chr8 34199683 34207046 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1581 1 509 Glycoside Hydrolase AT5G44640 50.195 2.27e-180 514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1581 8 34199683 34207046 Ssu2g0452 2 26313617 26319037 PCT