Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1491 ATGGCATCTTCGAGCGCAGCAGGTGCTGGATCCACCGATTCAACAGCTGCGAGAAGAAACACCAAGCGACCCAAGTATTCAAAGTTTACCCAGCAAGAGCTTCCAGCGTGTAAGCCAATTCTCACGCCACGAGCGGTTATTTCTGCATTCTTGCTTGTCAGCATTGTATTTGTTCCTATTGGAGTTGCTGCGCTAATTGCTTCAAGGAAGGTTGTTGAAATTGTTTATAGGTATGAATCAACATGCATACCACAGAACGTCACTGACAAGGTTGCATACATGCAGAGCTCTGCAGATAAAACATGCAAAATATCACTACATGTGGACAAGCATATGAAGTCGCCTATTTATGTCTACTATCAGCTTGACAACTTCTACCAGAATCATCGCCGatATGTTAAAAGCCGAAGTGATGAGCAATTGAGGGATCATAGTGAAGAGAACTCAACAAGTACTTGTAAGCCTGAAGATGTGGCCAATGGAAAGGCAATTGTACCTTGTGGTCTTATAGCTTGGAGTTTATTCAATGACACATACAACTTCTCTCGTGACAACCAGAATTTGACAGTGAACAAGAAGGGCATCTCCTGGAAAAGTGATAGAGAGCACAAATTTGGAAAAGATGTTTTCCCTAAAAACTTCCAGAGTAGTTCTATTAGAGGTGGTGCAAACCTCTCTGAATCCATACCATTGAGTGAGCAGGAGGATCTTATTGTCTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATAGAGATGGATCTGAATGAAGGTGATGACATAAATGTAACACTGCAAAATAACTACAACACATACAGTTTTAATGGCAAGAAAAAGCTCGTACTTTCAACTACTAGCTGGCTTGGTGGGAAGAATGACTTCCTTGGCATAGCCTATCTCACTGTTGGAGGATTGTGCTTTGTTTTGGCTTTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCTTCATATTTATCATGGAACAGGAATCCAGGAGGGCATTGA 1035 0.4184 MASSSAAGAGSTDSTAARRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSIVFVPIGVAALIASRKVVEIVYRYESTCIPQNVTDKVAYMQSSADKTCKISLHVDKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRDHSEENSTSTCKPEDVANGKAIVPCGLIAWSLFNDTYNFSRDNQNLTVNKKGISWKSDREHKFGKDVFPKNFQSSSIRGGANLSESIPLSEQEDLIVWMRTAALPTFRKLYGKIEMDLNEGDDINVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFVLALAFTIVYFVKPRQLGDPSYLSWNRNPGGH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1491 344 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 65 328 IPR005045 GO:0016020
Ssu8g1491 344 PANTHER ALA-INTERACTING SUBUNIT 3 2 343 - -
Ssu8g1491 344 MobiDBLite consensus disorder prediction 136 151 - -
Ssu8g1491 344 MobiDBLite consensus disorder prediction 136 155 - -
Ssu8g1491 344 MobiDBLite consensus disorder prediction 1 17 - -
Ssu8g1491 344 PANTHER CELL CYCLE CONTROL PROTEIN 50 2 343 IPR005045 GO:0016020
Ssu8g1491 344 MobiDBLite consensus disorder prediction 1 28 - -
Ssu8g1491 344 PIRSF Lem3/Cdc50 1 340 IPR005045 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1491 Ssu-Chr8 30119191 30127766 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1491 8 30119191 30127766 Ssu8g1491 8 30119191 30127766 ECH
Ssu8g1491 8 30119191 30127766 Ssu2g0470 2 27102437 27107784 PCT