Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1482 ATGGCGGAGAGTGGCGGTGCACACCGCCGTAGGGAATCGCTTCTAGTGTCGCCGGAGGAAGAGGTTGCAAAAGCTTCGTGGAGACTTAACGTGAAGGAGTTTCGTTTGCCAGACCAAACGCATGATCATCAACACCACCGATCCTTCACTTTCCGTGGCCTTCTCTGCAAGCCCAGGAAGCAACGCAAAGTGGCAGAATATTACAAGAAACAGGAGAGACTCCTTGAAGGATTTAATGAGATGGAGACTATGACTGAAACGGGTGGTTTCCCAGGAAGTCTCACTGAGGATGAAATGAAGCAACTAGCTAAGAGTGAGAGGATGGCTGTTCATGTGTCAAATATATGTAACTTGGTGTTGTTTGTAGCAAAGGTTTACGCCTCAGTTTCGAGCAGATCATTGGCAGTCATTGCCTCAACCATGGATTCTCTCTTGGATCTCTTGTCAGGGTTCATATTGTGGTTTACAGCTCATGCCATGaaaaacccaaaccaatatcacTATCCAATTGGAAAGAAACGCATGCAACCAGTGGGTATCATTGTTTTTGCATCAGTGATGGCAACCTTGGGGTTACAGATTTTGCTTGAATCTGCCCGGGAGCTTATTTCCAAGGCTAAGCCTGATGTGGATCCAACAAAACTGCATTGGACGATCGGGATTATGGTGTTTGTGACTGTAGTGAAGTTCATTCTTATGGTCTACTGTCGaagatttaaaaatgaaatcgTTAGAGCATATGCACAAGATCACTTTTTTGATGTCATTACTAATTCTGTTGGATTAGCTGCTGCTGTGCTAGCTGTCAAGTTCTACTGGTGGATTGATCCAACAGGAGCTATTGTTATAGCATTGTATACAATTAATACATGGGCCAAGACAGTCATTGAGAATGTTTGGTCACTCATTGGAAGGACAGCCCCACCTGATTTTCTGGCCAAGTTAACATACCTCATATGGAATCACCATGAGCAAATTAAGCACATAGATACTGTTAGAGCATACACCTTTGGTGCACATTACTTTGTGGAAGTTGACGTTGTGTTGCCAGAAGACATGCTTCTCCACCAAGCACACAACATTGGTGAGACGCTGCAAGAGAAGCTGGAGCAGCTTCCAGAAGTTGAGAGGGCTTTCGTGCACATAGATTTTGAGTTCACTCACAGACCAGAGCATAAGACCATGGTGTGA 1191 0.4358 MAESGGAHRRRESLLVSPEEEVAKASWRLNVKEFRLPDQTHDHQHHRSFTFRGLLCKPRKQRKVAEYYKKQERLLEGFNEMETMTETGGFPGSLTEDEMKQLAKSERMAVHVSNICNLVLFVAKVYASVSSRSLAVIASTMDSLLDLLSGFILWFTAHAMKNPNQYHYPIGKKRMQPVGIIVFASVMATLGLQILLESARELISKAKPDVDPTKLHWTIGIMVFVTVVKFILMVYCRRFKNEIVRAYAQDHFFDVITNSVGLAAAVLAVKFYWWIDPTGAIVIALYTINTWAKTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEQIKHIDTVRAYTFGAHYFVEVDVVLPEDMLLHQAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTMV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1482 396 Gene3D Cation efflux protein transmembrane domain 107 302 IPR027469 -
Ssu8g1482 396 PANTHER METAL TOLERANCE PROTEIN 9 19 396 - -
Ssu8g1482 396 Pfam Dimerisation domain of Zinc Transporter 309 383 IPR027470 -
Ssu8g1482 396 SUPERFAMILY Cation efflux protein transmembrane domain-like 105 304 IPR027469 -
Ssu8g1482 396 Pfam Cation efflux family 112 302 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Ssu8g1482 396 Gene3D Cation efflux protein, cytoplasmic domain 307 384 IPR036837 -
Ssu8g1482 396 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 307 383 IPR036837 -
Ssu8g1482 396 TIGRFAM CDF: cation diffusion facilitator family transporter 109 383 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Ssu8g1482 396 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 19 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1482 Ssu-Chr8 29945455 29949724 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1482 8 29945455 29949724 Ssu2g0478 2 27494775 27495095 PCT