Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1476 ATGGCCGCCTCCTCTCTCCTCAGATCCGCGCTTCTCGCACCTTCCTCCTCCGATCGCTTCAAGGTATTTAGCAATGCCTCGAgttgtaatttaaaatctaagGGATTACAGAACAGCATATGTGGTACTTCAATTCCATGTGAATCATTAGTTTTACAGTTGAGTTgctcaaacttttttaactattgcccttcttttcttttatgtgcCTGTTTCGGTTCCTTTAATAGTATGTGGTTTTATTATTTGTGGTTGTATTGGTGTTTGCACAGAAACTGCAATGCTCGTGGCATCCAGCCTATTAAAGCCACAGCAACGGAAATCCCTCTCCCCACCCAGAAATCAAGGAGCACTGGGAAGACAAGAGTCGGAATAAATGGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTCCCGAGATGATATTGATGTTGTTGCAATTAATGATCCATTTATTGATGCGAAATATATGGCGTACATGTTCAAATATGATTCTACTCATGGTCCATTCAAGGGGGCCATTAAGATTTTGGATGACTCTACCTTGGAAATTAATGGGAAGCAGGTTAAAATTGTGAGCAAAAGAGATCCTGCAGAGATCCCATGGGGTGATTTTGGGGCTGATTATGTCATTGAGTCTTCAGGAGTTTTTACAACAGTGGAGAAAGCTTCATCACATTTGAAGGCTGGTGCCAAGAAAGTCATAATATCAGCTCCATCTGCGGATGCACCAATGTTTGTGGTAGGAGTGAATGAGAAGACATACCACCCAAAAATGGATGTTGTTTCTAATGCAAGCTGTACAACGAATTGTCTTGCTCCTCTTGCCAAGGTAGTTCATGAAGAGTTTGGAATAGTTGAAGGTTTGATGACAACTGTACATGCAACAACAGCAACACAAAAGACAGTTGATGGCCCTTCTATGAAGGATTGGCGAGGGGGAAGAGGGGCAGGTCAAAATATAATTCCAAGTTCAACTGGTGCTGCAAAGGCTGTTGGGAAAGTTCTTCCTGAGCTAAATGGAAAACTCACTGGGATGGCATTCCGTGTACCGACTCCCAATGTTTCTGTGGTAGACTTGACTTGCCGGCTTAAGAAGAATGCTTCATATGAAGAAGTTAAAGCAGCAATTAAGCTTGCCTCAGAGGGAGTGCTGAAAGGAATCCTTGGGTACACAGAAGAGGATGTTGTCTCTAATGACTTTGTTGGTGATTCAAGGTCAAGTATCTTTGATGCTAAGGCTGGCATTGCACTTGGTGCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGCAACCGAGTGTTGGATCTTATAGAGCACATGGCATTGGTGGAAGCTCACAATTGA 1371 0.4143 MAASSLLRSALLAPSSSDRFKVFSNASSCNLKSKGLQNSICGTSIPCESLVLQLSCSNFFNYCPSFLLCACFGSFNSMWFYYLWLYWCLHRNCNARGIQPIKATATEIPLPTQKSRSTGKTRVGINGFGRIGRLVLRVATSRDDIDVVAINDPFIDAKYMAYMFKYDSTHGPFKGAIKILDDSTLEINGKQVKIVSKRDPAEIPWGDFGADYVIESSGVFTTVEKASSHLKAGAKKVIISAPSADAPMFVVGVNEKTYHPKMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLKKNASYEEVKAAIKLASEGVLKGILGYTEEDVVSNDFVGDSRSSIFDAKAGIALGASFVKLVSWYDNEWGYSNRVLDLIEHMALVEAHN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1476 456 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 268 275 IPR020830 GO:0016620
Ssu8g1476 456 SMART gp_dh_n_7 121 270 IPR020828 GO:0051287
Ssu8g1476 456 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 269 432 - -
Ssu8g1476 456 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 275 432 IPR020829 GO:0016620
Ssu8g1476 456 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 122 222 IPR020828 GO:0051287
Ssu8g1476 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 291 307 IPR020831 GO:0016620
Ssu8g1476 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 229 242 IPR020831 GO:0016620
Ssu8g1476 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 348 365 IPR020831 GO:0016620
Ssu8g1476 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 388 403 IPR020831 GO:0016620
Ssu8g1476 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 264 282 IPR020831 GO:0016620
Ssu8g1476 456 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 91 454 IPR020831 GO:0016620
Ssu8g1476 456 Gene3D Dihydrodipicolinate Reductase; domain 2 270 436 - -
Ssu8g1476 456 Gene3D - 122 449 - -
Ssu8g1476 456 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 122 444 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Ssu8g1476 456 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 91 454 - -
Ssu8g1476 456 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 121 290 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1476 Ssu-Chr8 29727097 29732692 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1476 8 29727097 29732692 Ssu8g1476 8 29727097 29732692 ECH