Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1468 atgggagaagaagaagcagaGTCATCCAAGTCGGTTACGCTGAAGCCCACAGAGGGAGAGGAATCGAAGGTTGAAACCCTAAAAACCACGAAGGGAGAAGAAACGAAAAAGGTTAAGGTGAAAACCGCGGACGACGTCTCGTTCGAGGTGGAGCCTTCGATCGTGAAGGAGATGGAGACGGTGCAGTCCTTCATCGACGCCAACGGCGCCGACGCCTCCGTCGTCATTCCGCTCCCCAACGTCGCCAGCCGCCACCTCGGTCGAATCATCGAGTACTGCTCGGAGCATTGTCGCGCCGCCGGCACCGGTAGCCTCAAGGAATTCGACGAGCGATTCTTGGAAGAGTTGAGCCCCGAGGAGTTGAAGGAACTGCTCCTCGCTGCGAACTACCTCGACATAAAGATCCTCCTCGATTTCCTTTCCAACAGCATCGCGGACCTCATCGAGAACAAGAGCCCCGAGTTCGTGAGGAACTTCTTCGACATTATCAACGATTACACACTCGAGGAAGAGGCCCGGATTCGCGACGCGAATGCCTGGGCCTTCGAAGGCGTCGACGATGATTAA 567 0.5414 MGEEEAESSKSVTLKPTEGEESKVETLKTTKGEETKKVKVKTADDVSFEVEPSIVKEMETVQSFIDANGADASVVIPLPNVASRHLGRIIEYCSEHCRAAGTGSLKEFDERFLEELSPEELKELLLAANYLDIKILLDFLSNSIADLIENKSPEFVRNFFDIINDYTLEEEARIRDANAWAFEGVDDD 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1468 188 Gene3D Potassium Channel Kv1.1; Chain A 30 184 IPR011333 -
Ssu8g1468 188 SUPERFAMILY Skp1 dimerisation domain-like 105 180 IPR036296 GO:0006511
Ssu8g1468 188 PANTHER SKP1 35 184 IPR016897 GO:0006511
Ssu8g1468 188 SUPERFAMILY POZ domain 37 98 IPR011333 -
Ssu8g1468 188 SMART skp1_3 35 133 IPR001232 GO:0006511
Ssu8g1468 188 Pfam Skp1 family, dimerisation domain 136 181 IPR016072 GO:0006511
Ssu8g1468 188 Pfam Skp1 family, tetramerisation domain 36 96 IPR016073 GO:0006511
Ssu8g1468 188 PANTHER SCF UBIQUITIN LIGASE, SKP1 COMPONENT 35 184 - -
Ssu8g1468 188 MobiDBLite consensus disorder prediction 1 29 - -
Ssu8g1468 188 PIRSF SCF_Skp 5 184 IPR016897 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1468 Ssu-Chr8 29506986 29507552 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1468 8 29506986 29507552 Ssu8g1468 8 29506986 29507552 ECH