Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1432 ATGCCCCTCTCTCCCTCTTCCATGGCTTCCATCCCACAGTTCTATCCAAACTACACGTTCACTGCTCATGATCTGTCAGAGTTCCCTACCCCACTCAATGGCTTAGTTGCGGACAACACCATGTGGGGTGGTCAAGATAGCTTGGTTCCTGTGATTGACATGAATAATGGTGCCCTTGATCATATTGTGTCACTTGATTGTGACACCATGGCTTGTGCTAATTGGATGCCATCCTTTTCTGAGCAACTTGGGGGCCTTTCAGACTTGGCCATTTCAGACTGCAAAATGGGCTTCTATGGAGGGTTACAAAATTTCAACAGCAGATACCAACCACATGCTGGGGAGTTTGGGGAAGAATGTTGTGGGTTCGTGGAGGATATTAAGCCGCCTGTTTATCCTAATACTGCCAGAGAAAATTGGGGAATTCAAGGCAATCAAATGCCAGCAGTTGAAGAGCCTAACATAAAGGTAGGAAGGTACtcagaagaagaaaggaaagagaggATTCTCCGatatttgaagaaaagaaatcaaagaaactTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGGGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTATGTGAGGAAGACATGGCAACAAAAAAGCATGagaatcatcatcatcacaaaGAAGACTTTTATGGTGGTGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAGGACTGGCTGCAAGAGGCCATGGCAAGTCTAGTCTATTTATCTCATTCTTCACCGGAAGATATGTAA 801 0.412 MPLSPSSMASIPQFYPNYTFTAHDLSEFPTPLNGLVADNTMWGGQDSLVPVIDMNNGALDHIVSLDCDTMACANWMPSFSEQLGGLSDLAISDCKMGFYGGLQNFNSRYQPHAGEFGEECCGFVEDIKPPVYPNTARENWGIQGNQMPAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMATKKHENHHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1432 266 Pfam CCT motif 165 207 IPR010402 GO:0005515
Ssu8g1432 266 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 261 - -
Ssu8g1432 266 ProSiteProfiles CCT domain profile. 165 207 IPR010402 GO:0005515
Ssu8g1432 266 PANTHER ACTIVATOR OF SPOMIN::LUC2 8 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1432 Ssu-Chr8 27535036 27536743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1432 161 215 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 2.70e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g1432 CCT 8.1e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1432 8 27535036 27536743 Ssu8g1432 8 27535036 27536743 ECH