Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1430 ATGAAAGAGGGTGGTAGAAAACAAGGTACAATGTCGCCATGTGCGGCGTGCAAGCTTCTTCGAAGGAGATGCACGCGGGATTGCGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTACACAAGGTTTTCGGGGCTAGCAATGTAAACAAAATGTTACAGGAATTACCTGAACACCAAAGAAGTGATGCGGTTAGTTCAATGGTATATGAAGCCAATGCAAGGGTGAGGGACCCCGTATATGGATGTGTGGGAGCCATATCCTCTCTTCAACAACAGGTTGATGTGCTTCAAACCCAATTGGCTCTGGCACAAGCAGAGGTTGTGCACATGAGGATGCGCCAATTTTCAACACCATCAGATCAGCAGCAACAACCCTCATCAGTGCCTCCTGAAGCCTCCAATTCATCATCAGAGAACTTGTACCAATCAAGCAGGCTCTTGTCTTCGCAAACCAAGTCCCTTTTTGGCATGGACATGGTCGTTGATCAGGCCAACATGGGGCAATCCTTGTGGTCATACTAG 540 0.4759 MKEGGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFSTPSDQQQQPSSVPPEASNSSSENLYQSSRLLSSQTKSLFGMDMVVDQANMGQSLWSY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1430 179 Coils Coil 92 112 - -
Ssu8g1430 179 MobiDBLite consensus disorder prediction 121 149 - -
Ssu8g1430 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 176 - -
Ssu8g1430 179 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Ssu8g1430 179 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Ssu8g1430 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1430 Ssu-Chr8 27493898 27497589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1430 1 178 AS2 family AT1G31320 66.298 5.19e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu8g1430 LOB 3.4e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1430 8 27493898 27497589 Ssu8g1430 8 27493898 27497589 ECH