Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1428 atggGTGTGAACCAAGATTTCAACAAGGATGATCATGAGTATGTGGATGATGATGAAGTTCCACTTCCGGGATTTCGATTCCACCCCACAGACGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAACCAGCGCCACTGGAGGAGATCAAAAAGAGGGGTACTTCTTTTGCAAAAGAGGGAGGAAGTATAGGAATAGCATAAGACCTAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAACTGGCATAGACAAGCCAGTGTACTCACACGGAGGAGAAGGCAATGAGTGCATTGGACTCAAAAAAACACTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCTTCTAACACAGACACCAACACAAATCTTCCCAACTCCAAGAATTATGTAGATATTCCCCAAGAAGCTGAAATTTGGACATTATGTcgaattttcaaaagaaatgtaACACACAGGAAGCACACGCCAGACTTGAAACAATTAGCTGCTAAGCGCCATACCATTCATGATAAGAGCTCCAGGATGAGCAGTGTAGAGTTTAACACTAATCAGGAAGCATATATCAACTTTGGTGGCCACCATCACAATGAGCAGAAACCCGCCATTAACTACACAAACAGTGATCAAAGGAATCAGTTTCATGTGAGTCAATTGTGTTCTCCAGTGGCACAGCAACCTCAATTAACTGCACCATCTTCTAACATTTGGATTAATCCTGTTGGGAACGACTTCTTCACGTTTGATAACTGGGATGAGCTTGGATCTGTAGTGAAGTTTGCTGTTGATTCGCCTAATAGCATGTAG 921 0.4224 MGVNQDFNKDDHEYVDDDEVPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKTSATGGDQKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNECIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTNLPNSKNYVDIPQEAEIWTLCRIFKRNVTHRKHTPDLKQLAAKRHTIHDKSSRMSSVEFNTNQEAYINFGGHHHNEQKPAINYTNSDQRNQFHVSQLCSPVAQQPQLTAPSSNIWINPVGNDFFTFDNWDELGSVVKFAVDSPNSM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1428 306 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 15 301 - -
Ssu8g1428 306 Pfam No apical meristem (NAM) protein 23 152 IPR003441 GO:0003677|GO:0006355
Ssu8g1428 306 ProSiteProfiles NAC domain profile. 21 186 IPR003441 GO:0003677|GO:0006355
Ssu8g1428 306 Gene3D NAC domain 30 190 IPR036093 GO:0003677|GO:0006355
Ssu8g1428 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 301 - -
Ssu8g1428 306 SUPERFAMILY NAC domain 20 186 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1428 Ssu-Chr8 27326645 27328903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1428 18 186 NAC Transcription Factor Family AT5G39820 60.000 2.02e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1428 NAM 1.4e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1428 8 27326645 27328903 Ssu8g1428 8 27326645 27328903 ECH