Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1419 atgttggaCACTTTGATGTCGCATATTATATCATTGCTTTGGTTACTTTGTAGACACTGCAGTATTTTAATCGGTTTCTGGAATGCAGGAAAATCCACACTCACTGATTCTCTCGTGGCTGCTGCTGGTATCATAGCACAAGAGGTTGCAGGAGATGTAAAGATGACAGATACCCGTCAAGATGAAGCTGAGCGTGGTATCACTATCAAGTCCACTGGTATCTCTCTCTACTATGAGATGCCTGAGGGTGATTTGAAGAATTTCAAAGGGGAACGTGAAGGGAACGAGTTCCTCATAAATCTCATTGACTCGCCTGGGCATGTTGACTTCTCATCTGAGGTCACGGCTGCGCTTCGCATCACTGATGGAGCACTTGTGGTGGTGGATTGTGTCGAGGGTGTCTGTGTCCAGACAGAAACTGTGCTGAGACAAGCCCTTGGAGAAAGGGTTAAGCCTGTTTTGGCTGTTAACAAGATGGATAGGTGCTTCCTTGAGCTCAACCTTGATCCAGAGGAGGCATATCTCACATTTCAGAGGGTTGTAGAGAGTGCAAATGTGATCATGGCAACCTATGAAGATGCCCTACTCGGTGATGTTCAGGGATACCCAGAGAAGGGAACTGTTGCCTTTTCTGCTGGCTTGCATGGATGGGGCTTTACCCTTACCAACTTTGCCAACATGTATGCTTCTAAATTTGGAGTTGATGAGGAGTAG 714 0.4594 MLDTLMSHIISLLWLLCRHCSILIGFWNAGKSTLTDSLVAAAGIIAQEVAGDVKMTDTRQDEAERGITIKSTGISLYYEMPEGDLKNFKGEREGNEFLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERVKPVLAVNKMDRCFLELNLDPEEAYLTFQRVVESANVIMATYEDALLGDVQGYPEKGTVAFSAGLHGWGFTLTNFANMYASKFGVDEE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1419 237 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 23 237 - -
Ssu8g1419 237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 236 IPR027417 -
Ssu8g1419 237 TIGRFAM small_GTP: small GTP-binding protein domain 23 172 IPR005225 GO:0005525
Ssu8g1419 237 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 16 237 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 23 237 - -
Ssu8g1419 237 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 IPR031157 -
Ssu8g1419 237 Pfam Elongation factor Tu GTP binding domain 23 220 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 CDD EF2 30 229 - -
Ssu8g1419 237 PRINTS GTP-binding elongation factor signature 116 127 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 PRINTS GTP-binding elongation factor signature 152 161 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 PRINTS GTP-binding elongation factor signature 20 33 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 PRINTS GTP-binding elongation factor signature 64 72 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 PRINTS GTP-binding elongation factor signature 100 110 IPR000795 GO:0003924|GO:0005525
Ssu8g1419 237 Gene3D - 18 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1419 Ssu-Chr8 27186173 27186886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1419 23 236 Eukaryotic Initiation Factors Gene Family AT1G56070 84.579 6.83e-124 369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1419 8 27186173 27186886 Ssu8g1419 8 27186173 27186886 ECH