Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1413 ATGGCCGTTGAGGCGCGCCATCTCAACCTCTTCCCCTCTCAACTCATCGGCAACAACCGGGAAGTGCTGAATTCCGTTGAGGCCAATATGAACATGTACAACGCACATCTGATGGGTTATTCTTCTTCGTTTCTTCCGTTATCTGGCGCCGTAACGGAAACAGTGCTCCCATCGTCGGTGTACAATTCTCTCGGAAACGCCGTTAAATCCGAGAGCGGTCTCacttacaacaacaacaacaacaacaacgttGTTCCTCCCATGTCGAGAAAGCGCTCCAGAGACAATTTCAGTTACAACGTTAACGACTCCTCCTTCTCGTTCCTCGGCCAAGACGTCTCTCTTCagatccaacaacaacaactcgaCATCGAGCAATTAATCATGCAACGAATGGAGAAGGTGAGAATGGAGATTGACGAGAAGCGGAAGAGGCAAGCGAGGAGGATCATCGAAGCGATAGAGATTGGCGTGATGAAGAAGCTGAGAGCGAAAGAAGAGGAGATAGAGAAAATCGGGAAACTGAACTGGGCTCTGGAGGAGAGAGTGAAGTCTCTCTGCATGGAGAATCAGATATGGCGCGACTTGGCGCAAACCAACGAGGCCACGGCGAATGCTTTGAGGACGAATTTGGAACAGCTGCTGGCTCAGCGCGGCGGAGTGGTGGTCGACGACGACGGCGGCGCCACCGTGTGCGCCGCCGCGGTGATGGAGGACGCGCAGTCCTGCTGCGGGAGCACCGACGGGGACGGTGGTGAAGAAAAGGAAGTGGGGTGGCGCACGTTACCGGGGTGCGCAGGGGTGAAGGTTAAGGACGAGGGCGGTGGTTGCGGGAAAATGATGAGCGAGGGGAATGGCGTGGGAAGGTTGTGCTGGAACTGCGGGAAGGAAGAGTCGTGCGTGCTGATTTTGCCGTGCCGGCATCTGTGTTTGTGTACTCTGTGTGGGTCTACACTCCACATTTGTCCCATCTGTAAATCCTTCAAGACTGCTAGTGTCCATGTTAACATGTCCTAA 1017 0.5182 MAVEARHLNLFPSQLIGNNREVLNSVEANMNMYNAHLMGYSSSFLPLSGAVTETVLPSSVYNSLGNAVKSESGLTYNNNNNNNVVPPMSRKRSRDNFSYNVNDSSFSFLGQDVSLQIQQQQLDIEQLIMQRMEKVRMEIDEKRKRQARRIIEAIEIGVMKKLRAKEEEIEKIGKLNWALEERVKSLCMENQIWRDLAQTNEATANALRTNLEQLLAQRGGVVVDDDGGATVCAAAVMEDAQSCCGSTDGDGGEEKEVGWRTLPGCAGVKVKDEGGGCGKMMSEGNGVGRLCWNCGKEESCVLILPCRHLCLCTLCGSTLHICPICKSFKTASVHVNMS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1413 338 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 337 - -
Ssu8g1413 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Ssu8g1413 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 338 IPR013083 -
Ssu8g1413 338 Coils Coil 197 217 - -
Ssu8g1413 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Ssu8g1413 338 Pfam Zinc finger, C3HC4 type (RING finger) 289 327 - -
Ssu8g1413 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 337 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1413 Ssu-Chr8 27117758 27119025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1413 263 327 Miscellaneous Gene Families AT4G39050 32.836 1.15e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1413 8 27117758 27119025 Ssu8g1413 8 27117758 27119025 ECH