Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1402 ATGGCGAAGCCCGGGCGAGGTCGTCGCTCACCCTCCGGTTCCGTTTCCGGCTCCTCCTCTCGCTCCTCCTCCCCCTCCGATTCCCACTCCTCCTCTCGCTCTCGCTCCCGCTCCCCCTCGCGCTCCAGatccttctcctcctcctcctcctcccccTCCCGCAGCTCCCGCAGCCGCAGCCCTCCCCCGCAGAGGCGCCGCAGTCCTGCTGAAGCAGCTAGGCGAGGTCGATCTCCTCCGCCTCAGTCTAAGAGAGCTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGTGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAAGGccatttgaaagaaattttcaGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAAGGATACGGATATGTGCAGTTCAAGACAAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTCTACCTCCAAGGCAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGCTCCGAAGAGAGACACCCCCAGGACTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCAAAGAGAATCTTCTCCTCGAAGAAAACCTCCTCCCTCACCACGGAGGAGATCTCCTGTGCCTCGAAGAGCTGCATCTCCAAGACGACCAGATTCTCCTCGCCGACGTGCAGATTCTCCTGTCCGTCGCCGATTAGACTCTCCTTTTCGCCGTGGAGGAGACACACCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACTGAGACGCCTTAGATCCCCTGGAAGGGTCTCACCTAGAAGGTTGCGTGGAAGCCCAGGTCGGAGACGttcacctcctcctcctcctcggCGCCGATCACCACCTAGACGACCTCGTAGCCCTCCTAGAAGGTCTCCACTCGGTCGTAGACGTACTCGCTCTCCAATACGTAGGTCTGCACGGTCACGCTCAAGGTCATTCTCACCTCGcagAGGTAGACCACCTGTTAGACGTGGGAGGTCATCATCCTACTCCGATTCACCAAGTCCACGCAAGGTATCCCGGAGATCAAAGAGTCGTAGTCCAAGAAGGCCTTTGAGAGGAAGAGGAGGTAGtaacagcagcagcagcagttcaccaccaccaccagctCGCAAACCATAG 1245 0.5068 MAKPGRGRRSPSGSVSGSSSRSSSPSDSHSSSRSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRRSPAEAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKRDTPRTDNASADVDKDGPKRQRESSPRRKPPPSPRRRSPVPRRAASPRRPDSPRRRADSPVRRRLDSPFRRGGDTPPRRRPVSPGRGRSPSPLRRLRSPGRVSPRRLRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPLGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGGSNSSSSSSPPPPARKP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1402 414 CDD RRM_RNPS1 102 174 IPR034201 -
Ssu8g1402 414 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 399 - -
Ssu8g1402 414 MobiDBLite consensus disorder prediction 200 225 - -
Ssu8g1402 414 MobiDBLite consensus disorder prediction 11 63 - -
Ssu8g1402 414 MobiDBLite consensus disorder prediction 294 364 - -
Ssu8g1402 414 MobiDBLite consensus disorder prediction 177 414 - -
Ssu8g1402 414 SUPERFAMILY RNA-binding domain, RBD 86 186 IPR035979 GO:0003676
Ssu8g1402 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Ssu8g1402 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Ssu8g1402 414 SMART rrm1_1 101 174 IPR000504 GO:0003723
Ssu8g1402 414 MobiDBLite consensus disorder prediction 242 272 - -
Ssu8g1402 414 Gene3D - 12 184 IPR012677 -
Ssu8g1402 414 MobiDBLite consensus disorder prediction 1 98 - -
Ssu8g1402 414 PANTHER BNAA09G56240D PROTEIN 1 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1402 Ssu-Chr8 26886042 26890577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1402 102 175 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 2.30e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1402 8 26886042 26890577 Ssu8g1402 8 26886042 26890577 ECH