Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1393 ATGGCTTCGCTCCTGAACACGGTGTCACCCGCCGCAAATTTATCCCCCAAAACGAAACGACCCACTTGTGGCGGTTTCTTGCATTCCCAGGTTCCCAATCTCCACTCTTTTTCCCTCAACAAGGGTTTTTCTAGGGTTTCGGCTTCGACCCAGATTGCCATTTCCCCAAAAGATGCTGTTTTCACCCTCCCCAATTGGAGGTTTGGGAAGAATGACCAAAAGGGTAAAGAGCTGAGGATTTATGATGCATTTCTTCATTTAGAGTACATGGTGGGTAAGGGCCACAAGCCTGAGGTAACTCAAGCCACTCAGCTTTTGTATGATCTTTGCAAATTCAATAAGGCTAGAAAGGCTGTTAGGGTGATGGAGATGATGGTTGGTTCAGGGATTATACCTGATGCAGCCTCTTACACACACTTGGTCAATTTTCTGTGCAAGAGAGGCAATGTTGGGTATGCAATTCAGTTGGTTGAGAAGATGGAGGGACATGGCTTTCCAACTGGTACTGTTACCTATAACACTCTGGTTAAAGGCCTTTGCATGCATGGGAACCTGAACCAGAGCTTGCAGCTTTTGGATAAGCTGACAAAGAAGGGCCTGGTCCCGAACGCCTTCACGTATTCTTTCCTGCTCGAAGCGGCGTATAAGGAGAGGGGAGTGGATGAGGCCATGAAGCTTCTGGATGAGATAATTGCCAAGGGTGGGGAGCCTAATTTGGTTAGTTACAATGTCCTGTTAACTGGGTTGTGCAAGGAAGGGAGAACTGAAGAGGCTATTAAGCTTTTCAGGGAATTGCCTGCGAAAGGGTTCAGTCCTAGTGTTGTGAGTTATAACATATTGCTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCAAACGAGCTCCTGGCAGAGATGGACAAAGAGAACCAGTCTCCCTCGGTGGTTACGTACAACATATTGATTACTTCGCTTTCCCTCCGTGGAAGAACAGAACAGGCTTTCAAGGTTTTAGATGAAATGATGAGGAGCGGGTTCAAGGCGAGTGCTACTAGCTATAATCCAATCATTGCCCGCCTCTGCAAGGAGGGGAAGGAGGATCTTGTTTTTCAGTTTCTAGACCAAATGATTCACCGACGCTGTAATCCTAATGAAGGAACGTACAGTGCTGTTGCGATGCTGTGTGAGCAAGGTAAGGTGCAGGAGGCTTTCTTTATAATCCAAAGCTTGGGTAATAAACAAAACTACCCTATGCATGATTTTTACAAGAATGTGATTGCAAGCCTGTGTAGGAAAGGGAACACATATCCAGCCTTTCAAATGTTAtatgaaatgacaaaatatgGATTTACTCCAGATTCATATACTTATTCATCTTTGATAAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTGAAGATATTCAGGATTTTGGAAGAAAATGACCACAGGCCTGATATTGATAACTACAATGCACTAATACTTGGATTTTGCAAGGCTCAGAGAACAGACTTGTCAATAGAGATATTTCTGATGATGGTTAACAAAGGATGTGCGCCTAATGAGACTACCTATACCATTCTTGTGGAAGGGCTTGCTTTTGAAGAGGAGACAGATATAGCAGCCGACCTGTTGAAAGAGTTATATGTGAAAGAGGTTCTGAGCCAAAGCACTGTTGAAAGACTTTGTATGCAATACGACCTCAAGGAATTAATAGCAACAGGGTAG 1716 0.4435 MASLLNTVSPAANLSPKTKRPTCGGFLHSQVPNLHSFSLNKGFSRVSASTQIAISPKDAVFTLPNWRFGKNDQKGKELRIYDAFLHLEYMVGKGHKPEVTQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTGTVTYNTLVKGLCMHGNLNQSLQLLDKLTKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFRELPAKGFSPSVVSYNILLRSLCYEGRWEEANELLAEMDKENQSPSVVTYNILITSLSLRGRTEQAFKVLDEMMRSGFKASATSYNPIIARLCKEGKEDLVFQFLDQMIHRRCNPNEGTYSAVAMLCEQGKVQEAFFIIQSLGNKQNYPMHDFYKNVIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCAPNETTYTILVEGLAFEEETDIAADLLKELYVKEVLSQSTVERLCMQYDLKELIATG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Ssu8g1393 571 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 567 - -
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 136 165 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 486 518 IPR002885 -
Ssu8g1393 571 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Ssu8g1393 571 Pfam PPR repeat family 237 285 IPR002885 -
Ssu8g1393 571 Pfam PPR repeat family 307 348 IPR002885 -
Ssu8g1393 571 Pfam PPR repeat family 481 529 IPR002885 -
Ssu8g1393 571 Pfam PPR repeat family 169 213 IPR002885 -
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Ssu8g1393 571 Pfam PPR repeat 443 472 IPR002885 -
Ssu8g1393 571 Pfam PPR repeat 129 161 IPR002885 -
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Ssu8g1393 571 SUPERFAMILY TPR-like 165 400 IPR011990 GO:0005515
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Ssu8g1393 571 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 567 - -
Ssu8g1393 571 Gene3D Tetratricopeptide repeat domain 303 373 IPR011990 GO:0005515
Ssu8g1393 571 Gene3D Tetratricopeptide repeat domain 75 185 IPR011990 GO:0005515
Ssu8g1393 571 Gene3D Tetratricopeptide repeat domain 186 302 IPR011990 GO:0005515
Ssu8g1393 571 Gene3D Tetratricopeptide repeat domain 384 566 IPR011990 GO:0005515
Ssu8g1393 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1393 234 545 Glycosyltransferase AT1G05670 29.430 4.20e-35 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1393 8 26687659 26689374 Ssu8g1393 8 26687659 26689374 ECH