Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1384 atgagcAACATAAGCATGGTAGAGGCAAAGCTGCCACCAGGGTTCAGGTTTCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACACACAACGATTCCCTTCTCATGATAGACGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGTAACAGCATGTGTGGGAGGGAAGGAGTGGTATTTCTACACACAACGAGACCGCAAGTATGCAACAGGCCTACGCACAAATCGTGCCACTGCCTCAGGGTATTGGAAGGCCACAGGGAAGGACAGGCCTATCCTCCGCAAGGGCACTCTTGTTGGGATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAGTGGGTCATGCATGAATTTCGTATTGAAGGTCCTCATGGACCTCctaaaatttcttcttccaagGAAGACTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGTATCCAAACCTAGCATGGGACCTAGCATGGGTAGCTGCTATGAGGACACAGGCTGTTCATCTCTTCCTGCATTAATGGACTCTTACATCAGTTTTGACCAAACTCAAACCCATGCAAATGAATTTGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCAGAACCAAACAAACCCTAATTTCAACCACATGATCACTATGGAGCCTAAGTTACCTGCCAACCATGCAACTACATATGGAGGAGCACCAAATTTGGGTTATTACTTAGACCCTTTATCCTGTGACAGAAAAGTGTTAAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGAATCCACTTAACCAAAGTCTAAAAGGGTCACCAAGCTTAGGAGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGGATGCCCCACATGTGGAACAATTACTGA 921 0.4397 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPVTACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVVSKPSMGPSMGSCYEDTGCSSLPALMDSYISFDQTQTHANEFEQVPCFSIFSQNQTNPNFNHMITMEPKLPANHATTYGGAPNLGYYLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1384 306 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Ssu8g1384 306 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 302 - -
Ssu8g1384 306 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Ssu8g1384 306 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Ssu8g1384 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 302 - -
Ssu8g1384 306 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1384 Ssu-Chr8 26531549 26535994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1384 2 304 NAC Transcription Factor Family AT1G56010 60.748 1.63e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1384 NAM 4.1e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1384 8 26531549 26535994 Ssu8g1384 8 26531549 26535994 ECH