Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1375 ATGTTAATTTTGGTTGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCCCATTCTGTGGTGAGGAGAGTCTCTCTTTCAAGAGGGAACTGCAAGGGGAGAAAGAAGTGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGTAGTAAGGGTGTAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTGTTTAAGTCCCCAGACAATAAGGGTGACCCCATATTGGGGCCCTCAAGGACTACTGGGGACCCTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCGCTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTGGGGAATTCTAAGGTGAATGGTGAAAGGAATAATGGTTCAGTGAATAAGCCAGCAAGGAATAATGCAGATGCTAATCCTAAGGCTGATAAACCGGTGAATTCAACAACAACTCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACACGGTTTCAGCGGTGCAGAAGGTTGTGAAGGAAGTACCAAAGCCCAATAACAAGAATGAAGGGGAGAAGTCTCAACCAAGGGGAGGGGAGAAGGTGGTTTCTCAAACTCGTGCTTTTCAACCGCCTTCGAAACCTCAACTGCCTTCGAAACCTCAACCGATGTTACAAACAAAACCTTCTATAGCTCCTCCACCTGTCAAGAAACCTGTTGTCTTGAGGGATAAGGGAGCAGCTGAAACATCTGTTAAATCTAAAGAAAAGAAGTCGCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCCCTGATTGCTCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCGCCTCCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTCCAGGTGGGGGAGGACAAAGGAGACGAATAGTACAGGATGACGATGATGATATGATTCATGATGAGGACGCATCAGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGcaagaaaaggaaggaaatgGAGTAAAGCAAGTCGAAAGGCAGCACGACTCCAGGCTGCCAGGGATGCAGCTCCTGTCAAAGTAGAAATTCTGGAGGTTGGTGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAAATCCTGGGTTATCTGTACTCCAAGGGCATTAAACCAGATGGGGTGCAAACTCTAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTGGAAGTCATAGATGCTGATCCGGTCAAAGTTGAAGGTTTAGTGAAGAAAAGGGAAATTCTTGATGAAGATGATCTTGACAAACTCAAAGATAGGCCTCCAGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCCTATAAAGTGCAAGTACCTGTTGATGGCAAACGGTTGCCCTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCACGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCCGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGATCGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGATTGGGGTGGTGACATCCCAATGGTTCAgATAAGTGCTCTTAAAGGGCAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAGCTGAAAGCTAATCCTAATAGAAGTGCAAAGGGAACGGTCATTGAGGCAGGGCTAGATAAATCAAAGGGACCATTTGCTTCATTTATTGTGCAGAATGGCACCCTTAGACGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTACACCTTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAATAGCTGGTGATGAATTTAAGGTTGTTGAATCCCTTGATACTGCACGCGAAAAGGCAGAGGTTCGTGCTGAGTCATTACGAAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCCTCCTTAGCTTCAGCAGTTTCGTCAGGAAAGCTGTCTGGACTAGACTTGCAtcaactaaatattattttgaaggTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCTCTGCAGGTGCTACCACAAGACAATGTCACACTGAAGTTTTTATTGGAAGCAACAGGTGATGTAAGCACAAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTCAGAGCACCAGGCTCTGTGAAAAGCTATGCAGAAAACAAAGCTGTTGAGATTAGATTATATAGAGTTATCTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCCTGGAATCTGTTGAGGAACAAGTATCAATTGGCTTAGCAGAAGTACGAGCCATATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGAAAGGTACTAAGCGGCTGTGGTATTCGAGTCAAGCGGAAGGGAAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAGGGAGGTTGTTAAAGAGGTAAGTGCTGGTCTTGAGTGCGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACAGTTCAGAAGAAGAGAACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTaggaaataaattatag 3048 0.4432 MLILVGNVQGTMSSLASPVSLGSLMGVSSSGRSHSVVRRVSLSRGNCKGRKKWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSSSKGVDDGAGFVLKPPPKPVFKSPDNKGDPILGPSRTTGDPGDVEERNKVIESLGEVLEKAEKLGNSKVNGERNNGSVNKPARNNADANPKADKPVNSTTTQKSKTLKSVWRKGDTVSAVQKVVKEVPKPNNKNEGEKSQPRGGEKVVSQTRAFQPPSKPQLPSKPQPMLQTKPSIAPPPVKKPVVLRDKGAAETSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPPPGKFKDDFRKKGAPGGGGQRRRIVQDDDDDMIHDEDASELNVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPVDGKRLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALKGQNVDDLLETVMLVAELQELKANPNRSAKGTVIEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSIPVQVIGLNNVPIAGDEFKVVESLDTAREKAEVRAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILGFNVRAPGSVKSYAENKAVEIRLYRVIYELIDDVRNAMEGLLESVEEQVSIGLAEVRAIFSSGSGRVAGCMVTEGKVLSGCGIRVKRKGKVVHVGILDSLRRVREVVKEVSAGLECGLGLEDFDDWEEGDILEAFNTVQKKRTLEEASASMAAAVEGVGNKL 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1375 1015 SUPERFAMILY Translation proteins 662 746 IPR009000 -
Ssu8g1375 1015 Coils Coil 745 765 - -
Ssu8g1375 1015 CDD IF2_eIF5B 489 655 - -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 322 336 - -
Ssu8g1375 1015 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 486 659 IPR000795 GO:0003924|GO:0005525
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 272 289 - -
Ssu8g1375 1015 CDD IF2_mtIF2_II 666 760 IPR044145 -
Ssu8g1375 1015 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 793 905 IPR036925 -
Ssu8g1375 1015 Gene3D - 483 661 IPR027417 -
Ssu8g1375 1015 SUPERFAMILY Translation proteins 901 995 IPR009000 -
Ssu8g1375 1015 Gene3D Translation factors 899 996 - -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 213 227 - -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 153 169 - -
Ssu8g1375 1015 Pfam Translation-initiation factor 2 794 887 IPR023115 -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 312 347 - -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 176 192 - -
Ssu8g1375 1015 Hamap Translation initiation factor IF-2 [infB]. 7 995 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Ssu8g1375 1015 Gene3D Translation factors 662 778 - -
Ssu8g1375 1015 Pfam Elongation factor Tu GTP binding domain 491 651 IPR000795 GO:0003924|GO:0005525
Ssu8g1375 1015 PRINTS GTP-binding elongation factor signature 558 569 IPR000795 GO:0003924|GO:0005525
Ssu8g1375 1015 PRINTS GTP-binding elongation factor signature 594 603 IPR000795 GO:0003924|GO:0005525
Ssu8g1375 1015 PRINTS GTP-binding elongation factor signature 490 503 IPR000795 GO:0003924|GO:0005525
Ssu8g1375 1015 PRINTS GTP-binding elongation factor signature 542 552 IPR000795 GO:0003924|GO:0005525
Ssu8g1375 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 662 IPR027417 -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 74 90 - -
Ssu8g1375 1015 Gene3D - 794 898 IPR036925 -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 147 289 - -
Ssu8g1375 1015 TIGRFAM small_GTP: small GTP-binding protein domain 488 649 IPR005225 GO:0005525
Ssu8g1375 1015 CDD mtIF2_IVc 905 987 - -
Ssu8g1375 1015 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 1005 - -
Ssu8g1375 1015 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 1005 IPR015760 -
Ssu8g1375 1015 MobiDBLite consensus disorder prediction 74 130 - -
Ssu8g1375 1015 TIGRFAM IF-2: translation initiation factor IF-2 408 997 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1375 Ssu-Chr8 26282514 26296860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1375 465 885 Eukaryotic Initiation Factors Gene Family AT1G76810 29.303 1.84e-28 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1375 8 26282514 26296860 Ssu8g1375 8 26282514 26296860 ECH