Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1374 ATGGAGGATAATAATCAATGGTGTCTCTATGACCATGACCCACTTCTTCTCACAGACGTTTCTTTGCAACAAGAATCCTCTCCTTATACTCACAGCTCCAATTCTATTTCACAAACATCACTGAGCTCTCGGAGTTTGGCTATGGCGGATGAGCCTGTGTCTCGTGGTTGTGATAGCCCCAGTATTGGGTTTTCTCGAGAAAATGGAGGTTTGGAAGGGAACAGCGTGAAATTCGATGACCCCATTGTGAGAAATGTGTTTGATGGAAGAACCATTTTGGGGTATTCTCTTACATCCCCAGATTTGGTGATTTGTGCTGGCTCACCAGATATTGCTGGAATCAGCTATGGTGATTCCCCTGAGTTGTTGAAGAACAAACATTGCAAGAATGTGGAGTCATCTATGGAGCTTTCTTTAGAGTATGGAATCAAGGGGTCTCAAGTTGAAGTTGACAATGGCCATAAGACCCCAACTGTTAAATTCTCTAACTTTTGTCAAACTTTTGAGCAAGAGGAAGAGCTGCTGTCCCCTGAAGCCTCCTTTGAGCTTCTTCCACCCCTTGTAACGAAGGATGAGTCACCCGAAGATTCCCTTCCTAGAGATAATGAGATGCTAGAAGATATTGGAGTGTCTCAGGAGGCAGAATTGGAGTCCTCAGAAGATGCCGAGGATATTGGGGTGGAAGAGAAGTTTAAGTGGCTGAAAAGAGACTTTGAGTGTAAGAGAAAGGAGCTGGCAGAAACAAGGAGGGAGCTGGGGGAGATCAAGAGGGAGAATCAACAGAAGAGTAGGGAATGCCAAGAAGCTTGGAACTCCTTGAAAGAGCTTCAGAATGAGCTAATGCGCAAGTCCATGCACGTAGGATCTTTAGCATTTGCCATTGAGGGGCAAGTGAAAGAGAAAAGTAGGTGGTTTTCATTGCTGAGAGACATGACGAGGAAATTGAAGATTATGAAGATGGAACACATCAAGCTATTAGAAGAAGCAGAggcaaacaaaaaatatcaagcaGATATGAGAGAAATGGGGCTTATTATCAACTCCAAAAtaaatgAACAACTGGAGTTGCATGAAGATCTCGAGTCCAAATATATTGAAGGGGCTAAGGAACGGAAAGAGCTTTACAATAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTATTTTGCCGTTGTAGGCCTCCCAATGCCGAAGAGATAGCTGCAGAAGCAACAATGGCCTTAGATTTTGAATCTGCAAAAGATGGTGAGCTAACTGTAATGTCAAATGGAGCTCCTAAAAAGACTTTCAAGTTTGATGCTGTCTTTGGTCCCCAAGCTGAGCAAGCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGGTACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTTCACAATGGAGGGCACAGAAGAGGCTCGCGGTGTTAATTTCAGGACTCTTGAAAAAATGTTTGACATAATCAAGGAGAGACAGAAGCTCTATTTTTATGATATCTCTGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTTCAGGAAATCATCCAGGAACAGCTGCAAAAAGACTTGAAATAAGGCAAGCTGGTGAAGGAATGCATCACATTCCAGGGTTAGTTGAGGCACATGTGAAAAATATGACTGAAGTCTGGGAAGTCCTCCAAACCGGTAGCAATGCAAGGGCTGTAAGCTCAACCAATTCCAATGAGCATAGCAGCCGATCGCACTGCATTCACTGTGTTATGGTTAAGGGGGAGAATTTGTTGACTGGGGAATGCACGAGAAGCAAGTTATGGCTGGTGGACCTAGCAGGCAGCGAGCGAGTGGCAAAGACAGAAGTGCATGGTGATAGACTGAAGgagacacaaaatattaataggTCTCTGTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACGAAAAGTTCACACATCCCTTTCAGGAACTCCAAGCTTACACACTTGCTGCAAGACTCATTAGGAGGAGATTCAAAGGCACTCATGTTTGTACAGATTAGTCCTAATGAAAACGATTTGAGTGAGACAATTTGCTCTCTGAACTTTGCTAGTAGAGTAAGAGGAATAGAATTGGGCCCTGCAAGAAAGCAGTTGGACACTGTTGAACTTTTGAGACACAAACAAATGGCTGAGAAAGTCAAACAAGAGGTGAAGCTGAAGGATTTGCAAATCAAGAAGCTGGAGGAAACAATCCATGGATTAGAGTCCAAGATGAAGGAAAGAGatagcaaaaacaaaaatctgCAAGAGAAGGTCAAGGAACTGGAATCACAACTTCTGGTTGAGAGAAAGCTGGCGCGTCAACATGTAGACTCAAAGATAGCTGAGCAGCACCAAATGAAGCATCAAGAAGAGCAAAATAATACACTTATGAGACCAGCAATTGCAAATAGACCGCTAGGAAGTCTCAAGAATTTTAATGATCCAGTGAGTGGTGGATGGTGCAAAGACCAAGCTAGACCACTCACAGAGAACAACAACATCTTGAAACCTTATATACCCTTTTCTACAATGGAGAGCTCCATCAAGTGCATTGATCATGCTGAGAAGGAAAACAATCCTGACATGGCTGACAAAGTCCTACTGCCAAAAAGGACCGGAAGAGCTTCTATGTGCATGATGACTCCGCGTGTTCCTTCAGCCATTGCTTCAAGGAGAAACTCTCTGATTCCACTCCCAAGTATACCTAGCTTAACACAATTCCAGTCACCATTATTACCAAAGTTAACAAACCTGGCTGAGCAGGAAGATGTCAATGGGGAATCAGAAACCAACTGTGTGCCTGCACAGACTCATTGTGAGAGTCCCAAAGAAGTTAGAAGTGGTGCTAAAAAGTTTGGTAGCATACTAAGAAGAAGCCTGCATAAGAAAATACAGGTGAAGTCTCCTCTTCAGCAACACATGAGGAAGGTTGGTGTAAATGTAGGGATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGGGGGAGATTGGCACCAAGGGTGCAAGTAGGAAGTGGTAGAAGAGGAGGAGCTAAAGATATTCAACAAAAGAACAgtcaaaaggaaaaggaaaggggATGGATTTGA 3129 0.4212 MEDNNQWCLYDHDPLLLTDVSLQQESSPYTHSSNSISQTSLSSRSLAMADEPVSRGCDSPSIGFSRENGGLEGNSVKFDDPIVRNVFDGRTILGYSLTSPDLVICAGSPDIAGISYGDSPELLKNKHCKNVESSMELSLEYGIKGSQVEVDNGHKTPTVKFSNFCQTFEQEEELLSPEASFELLPPLVTKDESPEDSLPRDNEMLEDIGVSQEAELESSEDAEDIGVEEKFKWLKRDFECKRKELAETRRELGEIKRENQQKSRECQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSLLRDMTRKLKIMKMEHIKLLEEAEANKKYQADMREMGLIINSKINEQLELHEDLESKYIEGAKERKELYNKVLELRGNIRVFCRCRPPNAEEIAAEATMALDFESAKDGELTVMSNGAPKKTFKFDAVFGPQAEQADIFEDTAPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKMFDIIKERQKLYFYDISVSVLEVYNEQIRDLLVSGNHPGTAAKRLEIRQAGEGMHHIPGLVEAHVKNMTEVWEVLQTGSNARAVSSTNSNEHSSRSHCIHCVMVKGENLLTGECTRSKLWLVDLAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPARKQLDTVELLRHKQMAEKVKQEVKLKDLQIKKLEETIHGLESKMKERDSKNKNLQEKVKELESQLLVERKLARQHVDSKIAEQHQMKHQEEQNNTLMRPAIANRPLGSLKNFNDPVSGGWCKDQARPLTENNNILKPYIPFSTMESSIKCIDHAEKENNPDMADKVLLPKRTGRASMCMMTPRVPSAIASRRNSLIPLPSIPSLTQFQSPLLPKLTNLAEQEDVNGESETNCVPAQTHCESPKEVRSGAKKFGSILRRSLHKKIQVKSPLQQHMRKVGVNVGMEKVRVSIGSRGRLAPRVQVGSGRRGGAKDIQQKNSQKEKERGWI 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1374 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 747 IPR027417 -
Ssu8g1374 1042 PRINTS Kinesin heavy chain signature 458 479 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 PRINTS Kinesin heavy chain signature 580 597 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 PRINTS Kinesin heavy chain signature 660 681 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 PRINTS Kinesin heavy chain signature 611 629 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 MobiDBLite consensus disorder prediction 27 47 - -
Ssu8g1374 1042 SMART kinesin_4 382 718 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 Pfam Kinesin motor domain 390 710 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 218 1030 - -
Ssu8g1374 1042 MobiDBLite consensus disorder prediction 27 70 - -
Ssu8g1374 1042 ProSiteProfiles Kinesin motor domain profile. 384 710 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu8g1374 1042 ProSitePatterns Kinesin motor domain signature. 610 621 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu8g1374 1042 MobiDBLite consensus disorder prediction 1028 1042 - -
Ssu8g1374 1042 PANTHER KINESIN-LIKE PROTEIN KLP-3 218 1030 - -
Ssu8g1374 1042 Coils Coil 238 279 - -
Ssu8g1374 1042 Gene3D Kinesin motor domain 326 712 IPR036961 -
Ssu8g1374 1042 CDD KISc_C_terminal 382 712 - -
Ssu8g1374 1042 MobiDBLite consensus disorder prediction 1007 1042 - -
Ssu8g1374 1042 Coils Coil 731 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1374 Ssu-Chr8 26274240 26279252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1374 359 737 Calmodulin-binding Proteins AT5G65930 42.932 1.75e-81 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1374 8 26274240 26279252 Ssu8g1374 8 26274240 26279252 ECH