Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1373 ATGGACGAACCCACATTGTTGTTCCCAGACACAGACCTCGACCTGAGCTTCACCAGCACCACCACCGACCGCACCAGCGCCCGCACCAGCCTCGCCCGCACCAGCAGCCTCACCCTCAGCTTCAACGACCGCCTCCTCGCCTCCGAATCCGCCGCCGCCCTCCGCCGCCTCCCCCACCGGAGCTCCGACCCCCACTGGTCCGCCGTCCAGGCCGCCATCACGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCACCTCAAGCTCCTCCGCCACCTCGGCTCCGGCAACCTCGGGCGCGTCTTCCTCTGCCGCCTCCGCGACTACGACGGCGCCAGCTTCGCCCTCAAGGTCGTCGACAAGGACCTCCTCACACCCAAAAAACTCTCCCACGCGGAAACCGAGGCCCAGATCCTCCACGCGCTCGACCACCCCTTCCTCCCCACGCTCTACGCGCGCATCGACGTCTCGCACTACACGTGCCTCCTCATCGACTACTGCCCCGGCGGCGACCTCCACTCCCTCCTCCGCAGACACCCCGCCCGCCGCCTCCCCCTCACGGCGGCGCGTTTCTTCGCCGCCGAAGTCCTCGTCGCGCTCGAGTACCTCCACGCCCTCGGCGTCGTCTACCGCGACCTCAAGCCCGAGAACGTCCTCTTACGCGAGGACGGCCACGTCATGCTCTCGGATTTCGATTTATGCTTCAAGGCTGACGTGGCACCCAGTCTTAACCTCTGGGCCCACAAATCCCACGTGGCACCCAGAAACGGTTGTTTCAGTCACAACCGTCGCGGATCGAGGGAAAAAGAAAGATTTGTTGCGGAGTTTGTGGCGGAACCGATAACGGCGTTTTCACGGTCGTGCGTTGGGACGCATGAGTACTTAGCGCCCGAGCTTGTTTCGGGGAACGGTCACGGTAACGGCGTGGATTGGTGGGCTTTCGGGGTTTTTATTTACGAGTTGTTGTACGGGACGACGCCGTTTAAGGGGTGTAACAAGGAGGGCACGCTCCGCAATATAGCGTCGAGTAAGGACGTGAGGTTCCTCCACGTGGCGGAGCGAGAGGAGCCTGGAATGGCTGAGGCTAGGGATTTGATAGAGAGGTTGTTGGTGAAGGACCCTCGGCGAAGGCTAGGGTGCGCCAAGGGTGCTACTGATGTTAAACGACACGCGTTTTTTGATGGGATTAAATGGCCGTTGATTAGGACTTACCGGCCGCCGGAGGTAAAAGGGTTAATGAGAAGGAATAATAAGTCGCACGTGAGTGGAAAgaagaggtggtggtggtggtggaagaGACTTGGGCATGTGATGAGGAGCAAAGGGggtaaatataatttgttttcaaactatagtaatagtaattattataactatgtTGATGATAGTTATAAGGTTAGGTAA 1401 0.576 MDEPTLLFPDTDLDLSFTSTTTDRTSARTSLARTSSLTLSFNDRLLASESAAALRRLPHRSSDPHWSAVQAAITLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGASFALKVVDKDLLTPKKLSHAETEAQILHALDHPFLPTLYARIDVSHYTCLLIDYCPGGDLHSLLRRHPARRLPLTAARFFAAEVLVALEYLHALGVVYRDLKPENVLLREDGHVMLSDFDLCFKADVAPSLNLWAHKSHVAPRNGCFSHNRRGSREKERFVAEFVAEPITAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFIYELLYGTTPFKGCNKEGTLRNIASSKDVRFLHVAEREEPGMAEARDLIERLLVKDPRRRLGCAKGATDVKRHAFFDGIKWPLIRTYRPPEVKGLMRRNNKSHVSGKKRWWWWWKRLGHVMRSKGGKYNLFSNYSNSNYYNYVDDSYKVR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1373 466 Gene3D Transferase(Phosphotransferase) domain 1 284 409 - -
Ssu8g1373 466 Gene3D Transferase(Phosphotransferase) domain 1 170 237 - -
Ssu8g1373 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Ssu8g1373 466 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 9 425 - -
Ssu8g1373 466 SUPERFAMILY Protein kinase-like (PK-like) 62 408 IPR011009 -
Ssu8g1373 466 Gene3D Phosphorylase Kinase; domain 1 85 169 - -
Ssu8g1373 466 Pfam Protein kinase domain 88 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1373 466 SMART serkin_6 86 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1373 466 PANTHER FLIPPASE KINASE 1-RELATED 9 425 - -
Ssu8g1373 466 ProSiteProfiles Protein kinase domain profile. 86 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1373 Ssu-Chr8 26261880 26263280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1373 1 466 AGC Kinase Gene Family AT3G14370 63.525 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g1373 Pkinase 1.8e-53 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1373 8 26261880 26263280 Ssu8g1373 8 26261880 26263280 ECH