Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1341 ATGAGACAGAAGTCAAGAAATAACAATGATTCCATGTTggaggaagaaatttcaaacgtCAATTCTGGTGGCTTTGGAGTATATAATAACAAACATGATGCATCAAGAAACACAACCCATGAAGATGACAACCATCAAAGTCAATATGGAAGTGCATTTGTAACAAGAAACAAATATGGACACTCAAGTGTCTCAAGTGCTGCAAACAATGATAGCAGTGTAGATGAATTTGAAACAGACACCACCACTAAAGGTGTAAATATAGTCAAAGGGGTAAATTATCATTCTGATGAAGCAGCGCAATACAAACGCTCTTCTGAAATGACAATCAAAGGAAGCATGAAAGCTAAAAAGATATTACATTCTCCCAAGACCAAATCTTCTAAATCACCAAAGTCAACATCAAAGACATCAACAGACTTTTGTTGCTCAGATAtagagaagaaaggaaaaactaCAGATGAACCAAAAGTTGCTGGAATCAGTGATAACATCCCTTTGCATGGTAATGGTAGCAATGGGGCTGCAAGCACTGGAATTATGAAAATGATGGGCTTGAGGAAATCAGCAAAACTTACTCCTCTAGCCTCTACAGAAGGCATTGACGTAAAGTGcaagaaggtgaagaagataAAGATGTTGTTTCCTTATGATGaatttgtaaagatttttcAGAGTGATGTCTTTGGTATATGCCCCAGGGGCCTTTTAAATTGTGGGAACAGtTGCTATGCCAATGCTGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTAGTCGTATATTTGCTTTATAGATCACACTCAAAAGCCTGTTGTGCTAAAGACTGGTGTCTCATGTGTGAGTTAGAGCAACACATTATGATTTTAAGAGAATATGGGGCTCCTCTATCTCCTAGTAGGATACTTTGGCATATGCGGAGCATTAATTGCCACATGGGTGAAGGAAGTCAGGAAGATGCCCATGAATTTTTAAGGCTTCTAATTGCATCAATGCAATCTATATGCTTGGAGGGACTTGGTGGTGAGAAAAAGGTTGATCCTAGACTACAAGAAACAACTTTCATACAACATACTTTTGGTGGCCGTCTTCAATCCAGGGTTAAGTGTTTGAATTGTAATCATGAATCAGAAAGGTATGAGAACATTATGGATTTGACGTTGGAGatattgggttgggttgagtcaCTGGAAGATGCACTGACTCAGTTTACTTCCCCTGAAGATTTGGATGGAGAAAATATGTACAGATGTGGAAGGTGCACAACATATGTTCGAGCTAGAAAGCAGCTGAGCATACATGAGGCTCCTAACATCTTAACTATAGTTTTGAAGAGATTTCAGGAAGGAAGATATGGGAAAATTAACAAGTGCATAACGTTTCCTGAAATGCTGGATATGATTCCTTTCATGACTGGGACGGGTGATGTTCCTCCACTTTACATGCTTTATGCTGTTGTCGTGCACCTGGACACACTAAATGCATCTTTCTCTGGACACTATGTTTCCTATGTGAAAGATCTGCAAGGCAATTGGTTCAGGATAGATGATACTGAGGTTCAGCCAGTGCTAATTAATCAGGTCATGTCAGAAGGAGCATATATCTTATTCTACATGAGGTCTTGTCCCCGTCCTCTGGTAGAGCATGCCGGGAAACCTGTGCAGCAATCAGTTTATGATTCTTCAAAGCACAATACAATGGAAATGCAGAAGCCTAACAAACCAGTACATAGCAGGCATGGCAGTCAGGTTTTTGTCCCAGAGCCATCACCCAATGCCAGGCCAGAAATCGCCACTCGCATTATCGACACCACTAATGGCTTCCTTAGAAAAAGCACCAATAGGAATGCCCTGCCAGTGACACAAACTTATGCCGAAAATGTCAGGCACGAGTTTTCAGACGCCACATCAAGTGATTGGTCCCTTTTCACAAGCTCAGATGAGGCTTCTTTCACAACTGAGAGCACCAGGGACTCCTTCAGCACTGTAGACTATGGTGATTCATGCAACATGGATCCAATTTCATCCATCTTCAATTACACCCCAGAAAAGTCCTACATGAAGTTTTCACATAGTAGGCCAGTTACCAGGGTCTTCCCTGAAAAGGGTCATGTTGAACAAGTACAGAGAATTGATCACTCTAAAAGGGTCAGCCATTCTTCAAATGAACATCCACCAAATGGGAATTGCGGCATGTATGTATATTATGGGAGTAATCCTGTGTGTGGTATTACCCGGACTCCTAGTCAGTGTGAATTTTAG 2259 0.3944 MRQKSRNNNDSMLEEEISNVNSGGFGVYNNKHDASRNTTHEDDNHQSQYGSAFVTRNKYGHSSVSSAANNDSSVDEFETDTTTKGVNIVKGVNYHSDEAAQYKRSSEMTIKGSMKAKKILHSPKTKSSKSPKSTSKTSTDFCCSDIEKKGKTTDEPKVAGISDNIPLHGNGSNGAASTGIMKMMGLRKSAKLTPLASTEGIDVKCKKVKKIKMLFPYDEFVKIFQSDVFGICPRGLLNCGNSCYANAVLQCLTSTKPLVVYLLYRSHSKACCAKDWCLMCELEQHIMILREYGAPLSPSRILWHMRSINCHMGEGSQEDAHEFLRLLIASMQSICLEGLGGEKKVDPRLQETTFIQHTFGGRLQSRVKCLNCNHESERYENIMDLTLEILGWVESLEDALTQFTSPEDLDGENMYRCGRCTTYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDVPPLYMLYAVVVHLDTLNASFSGHYVSYVKDLQGNWFRIDDTEVQPVLINQVMSEGAYILFYMRSCPRPLVEHAGKPVQQSVYDSSKHNTMEMQKPNKPVHSRHGSQVFVPEPSPNARPEIATRIIDTTNGFLRKSTNRNALPVTQTYAENVRHEFSDATSSDWSLFTSSDEASFTTESTRDSFSTVDYGDSCNMDPISSIFNYTPEKSYMKFSHSRPVTRVFPEKGHVEQVQRIDHSKRVSHSSNEHPPNGNCGMYVYYGSNPVCGITRTPSQCEF 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1341 752 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 40 700 - -
Ssu8g1341 752 MobiDBLite consensus disorder prediction 1 51 - -
Ssu8g1341 752 MobiDBLite consensus disorder prediction 12 33 - -
Ssu8g1341 752 Pfam Ubiquitin carboxyl-terminal hydrolase 235 537 IPR001394 GO:0004843|GO:0016579
Ssu8g1341 752 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 40 700 - -
Ssu8g1341 752 MobiDBLite consensus disorder prediction 565 592 - -
Ssu8g1341 752 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 234 540 IPR028889 -
Ssu8g1341 752 Gene3D Cysteine proteinases 231 545 - -
Ssu8g1341 752 SUPERFAMILY Cysteine proteinases 231 540 IPR038765 -
Ssu8g1341 752 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 235 250 IPR018200 GO:0004843|GO:0006511
Ssu8g1341 752 CDD Peptidase_C19E 233 538 - -
Ssu8g1341 752 MobiDBLite consensus disorder prediction 114 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1341 Ssu-Chr8 25117181 25123126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1341 208 588 Miscellaneous Gene Families AT4G31670 48.462 1.09e-127 392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1341 8 25117181 25123126 Ssu8g1341 8 25117181 25123126 ECH