Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1151 ATGGTTGCGCCACGTCTATTACTGCGGGAAGATAACGAAGACGAAGAGGATCAGGAAATGCTCCTCCACGAGGCtcaaaaggATAGGAACCAAAGGCTTCATTGTCCTGAAAGGAACCCCTTCTTGGGTGAGGCATCGCAGGATTCGGGGTTTAAGAAGGAAAGGGATAGGGTTCTGTTGGCTCAAGGTGATCAGCCAAAAAATTTGGGTGGTGGGTTTTCTGGGTTATGTGAGGATGAAGTGGAGGTTGACCCCTTTTTTGGTGCTGTAGAATGGGGTGATATTAGCTTGAGGCAGTGGTTGGATAAACCTGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAGATTGTTAGTGTAGCACATTCTCAAGGAGTTGTAGTTCACAATGTGAGGCCTTCCTGCTTTGTCATGTCGTCTTTCAACCATATCTCATTTATTGAATCAGCATCTTGTTCAGATACTGGCTCAGATTCTTTAGGAGATGGAATGAACAACCAAGGCTGTGAGATTAAAACTCCAACATCAGGCTGTCCCCATGATATGCATCAGCAGAGTTTGGGAAGTGAAGATTTTATGCCTGTCAAGACTTCAACAACCACTGCTCGGTCAGATTCTAGTTGCATGCTGTCAAGTGCTGTGTATGCTGCTCGTGCATCGTTGATAGAAGAAACGGAGGAACATAAAATGAAAGATAGGAGAAAGGATGAAGAAGTAGAAGGAAAGAAGCAGTCATTTCCAATGAAACAGATACTGCTCATGGAGATGAGTTGGTACACTAGTCCCGAGGAGGTTGCTGGTGAATCTAGTGCTTGTGCTTCAGACGTTTATCGACTGGGGGTTCTCCTTTTTGAGCTATTTTGTCCGCTCAGttcaagagaagaaaagagtagAACCATGTCTAGCCTTAGACACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTAGGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAGAGAGATAATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGAGGATCAGGAGTTGTTGTTAGAATTCCTTTTATTACTTCAACAGAGAAAACAAGAAGTTGCTGAGAAGTTGCAACATACTATCTCTTTTCTGTGTTCAGATATTGAAGAAGTCGCCAAGCAGCAAATTAGATTTAAAGAGATTACTGGTGCTGACCTAGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCCATGACAGCTTTTGATAGCGAGGACTCTGCTTGTCTAGGGACTAGAAAGCGAGTCAGACTGGGGATGCATGTTAAAAACATTGAGGAATGTGATGATGACGTAGGGGATGATCAGAAAAGTAATGAaagttttctttcaaaaagTTCACGGctaatgaagaattttaagaaaCTTGAGTCAGCATACTTTTTAACACGATGTAGACCAGCCTATTCCTCTGCAAAACTGGTGGCTAGACATCCAACTGTAACAAATGATGGTAGAGGGTCTGTTGTCATGACTGAAAGAAGTTGCATCAATGACTTGAAATCAAAAGATCAGGGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGCTAAAGGTTAAGGCTGACCTAAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCCGGTgtgaataagaaaattaaagtctTTGAATGTGATTCAATCATAAATGAGGATCGTGATATCCACTATCCCGTAGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTATATGTTGGaatacatacatcaaaagtCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAATACTCTCTGAGATGAGGGAGCATGAGCGGCGGGTGTGGTCGATTGATTTCTCATCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTTCCTCTGGATTCTGCTCGTTTCCTTGCATTTGGTTCCGCAGATCACCGAATATATTACTATGATCTTCGCAACCTAAAAATGCCTCTTTGTACTTTAGTTGGACATAACAAGACTGTCAGCTACATCAAGTTTGTAGACACTGTGAACATTGTCTCTGCATCCACAGATAACACTTTAAAGCTTTGGGATTTGTCTATGTGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACTGGTCACATGAATGTTAAGAACTTTGTGGGATTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTATTTCATATGCCCTTTTCTACCAGTTTTCCTGTTGATTTTACAGTACTACTGAAGGTAACCTTCTGTGTGGATTAG 2574 0.4099 MVAPRLLLREDNEDEEDQEMLLHEAQKDRNQRLHCPERNPFLGEASQDSGFKKERDRVLLAQGDQPKNLGGGFSGLCEDEVEVDPFFGAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGMNNQGCEIKTPTSGCPHDMHQQSLGSEDFMPVKTSTTTARSDSSCMLSSAVYAARASLIEETEEHKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGESSACASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDNMEEREAAIELRQRIEDQELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVAKQQIRFKEITGADLGSDDRSASSFPSMTAFDSEDSACLGTRKRVRLGMHVKNIEECDDDVGDDQKSNESFLSKSSRLMKNFKKLESAYFLTRCRPAYSSAKLVARHPTVTNDGRGSVVMTERSCINDLKSKDQGREGASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQILSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNIVSASTDNTLKLWDLSMCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFHMPFSTSFPVDFTVLLKVTFCVD 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1151 857 SUPERFAMILY Protein kinase-like (PK-like) 91 356 IPR011009 -
Ssu8g1151 857 Coils Coil 349 378 - -
Ssu8g1151 857 SMART serkin_6 15 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1151 857 Gene3D Transferase(Phosphotransferase) domain 1 94 365 - -
Ssu8g1151 857 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 758 791 - -
Ssu8g1151 857 Pfam WD domain, G-beta repeat 754 789 IPR001680 GO:0005515
Ssu8g1151 857 Pfam WD domain, G-beta repeat 582 611 IPR001680 GO:0005515
Ssu8g1151 857 Pfam WD domain, G-beta repeat 668 705 IPR001680 GO:0005515
Ssu8g1151 857 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 672 709 - -
Ssu8g1151 857 ProSitePatterns Trp-Asp (WD) repeats signature. 776 790 IPR019775 -
Ssu8g1151 857 PANTHER PROTEIN SPA1-RELATED 3 35 835 - -
Ssu8g1151 857 SUPERFAMILY WD40 repeat-like 582 840 IPR036322 GO:0005515
Ssu8g1151 857 ProSiteProfiles Protein kinase domain profile. 1 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1151 857 PANTHER PROTEIN SPA1-RELATED 2 35 835 IPR044630 GO:0009640
Ssu8g1151 857 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 714 IPR001680 GO:0005515
Ssu8g1151 857 PRINTS G protein beta WD-40 repeat signature 776 790 IPR020472 -
Ssu8g1151 857 PRINTS G protein beta WD-40 repeat signature 692 706 IPR020472 -
Ssu8g1151 857 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Ssu8g1151 857 MobiDBLite consensus disorder prediction 25 50 - -
Ssu8g1151 857 Gene3D - 558 849 IPR015943 GO:0005515
Ssu8g1151 857 SMART WD40_4 577 612 IPR001680 GO:0005515
Ssu8g1151 857 SMART WD40_4 623 662 IPR001680 GO:0005515
Ssu8g1151 857 SMART WD40_4 708 747 IPR001680 GO:0005515
Ssu8g1151 857 SMART WD40_4 751 789 IPR001680 GO:0005515
Ssu8g1151 857 SMART WD40_4 665 705 IPR001680 GO:0005515
Ssu8g1151 857 ProSiteProfiles Trp-Asp (WD) repeats profile. 758 791 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1151 Ssu-Chr8 20465600 20477259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1151 658 791 Miscellaneous Gene Families AT5G08390 29.927 6.62e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Ssu8g1151 WD40 9.6e-05 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1151 8 20465600 20477259 Ssu3g1797 3 55984978 56005177 ECH
Ssu8g1151 8 20465600 20477259 Ssu8g1151 8 20465600 20477259 ECH