Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0471 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCGAATTGGCAGCAACAACAAAATCAACACCAAGCAAATGGCAGTAACAGTCCTCAGCTGCTTCCCCCGCTACCTCAACTGCCACAGGCCCCTCACGTGGGAGTTGAAGCGGGCCCAATCAGGCCCGGTTCGATGGCGGATCGGGCCAAGATAGCGCCCCAGGAGGGAGCTCTGAAGTGTCCACGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCGCGGCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCGGTTGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGACTCGCTCCAAATCTCCGGTATCCACTTCACTTCCCAATTCCACAAGTGCAATACCTCCTGAGCTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTGCAGAATATTAGCCGCTATGGTGTAGGGAACACAGGTGTTGGCTTGCGTGAGATCCAAGCACAGAATACTCATATGGGGTTTCAGTTTGGTGGTCATGGCTCAAGTGGTACTATTGCAGGAGGAGGAGTGGACCAGTGGCGGTTTCAGCAGTTTCCTTTCTTGAATGGTTTTGAGTCAACTTCAGCTGTTTCTTCCTACCCTTTTCAAAGTGAAACTGTTGAAGGTTTGGTTGGGGATATTGCCGCAACTTCTAGGGTTACTCAGGTGCCAGCACGGGTTAAATTGGAATATAACGGTGGCTTGACTTTGTCAAGATCTCCTTTGAGTATCTCAGAAAATAGTGGCCATTACTATTCATGGACTGATTTATCTGGTCTTGCGTCTTCTTCCGCTAGTCATCTCTTGTAA 891 0.4871 MVFSSIPVYLDPPNWQQQQNQHQANGSNSPQLLPPLPQLPQAPHVGVEAGPIRPGSMADRAKIAPQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRTRSKSPVSTSLPNSTSAIPPELIGRFPQPFMASLQNISRYGVGNTGVGLREIQAQNTHMGFQFGGHGSSGTIAGGGVDQWRFQQFPFLNGFESTSAVSSYPFQSETVEGLVGDIAATSRVTQVPARVKLEYNGGLTLSRSPLSISENSGHYYSWTDLSGLASSSASHLL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0471 296 MobiDBLite consensus disorder prediction 115 145 - -
Ssu8g0471 296 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677|GO:0006355
Ssu8g0471 296 MobiDBLite consensus disorder prediction 16 32 - -
Ssu8g0471 296 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Ssu8g0471 296 MobiDBLite consensus disorder prediction 16 56 - -
Ssu8g0471 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 292 IPR045174 GO:0003700|GO:0006355
Ssu8g0471 296 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Ssu8g0471 296 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0471 Ssu-Chr8 7421378 7422448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0471 1 126 C2C2-Dof Transcription Factor Family AT2G37590 58.621 2.68e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu8g0471 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0471 - - gmx:100775899 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0471 8 7421378 7422448 Ssu8g0471 8 7421378 7422448 ECH
Ssu8g0471 8 7421378 7422448 Ssu3g2624 3 79796315 79797422 PCT