Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0280 ATGCAGGATCCAACGATATTCCAGCCCGTGAAACCCCACTTTCCCGAACAGGAACAACTTAAATGCCCGCGCTGTGACTCCACCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGTCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCCGTTGGGGGTGGAAGCAGAAAGAACACAAAACGATCATCCAACAACACCAAACGCCCTGCCACGTCATCACCTTCTCCATCACCCTCGGTTTCCTCTGCACTAACTGCGCCAGAACCCGATCCGACCCGAGTTTACCACAACCCGGGTGGTCAAGACCAAAGGGTGCGTAACGTTGCTGGGAGTTTCAGTTCCCTTTTGGCATCAAGTGGCCATTTGGGGAACCTTTTGGAGGGTCTGAATTCAAATGGGTCAAATCCAAAAACTCTGCAAATGGAAGAGTTTGGGGAGAATGTTAGTTGTTCTGGTCCAATGGTGGATCCGAATCCCGGGTTGCAGATGCAAAGCAATAGCAATGCAGAGAGTTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTACTAATGGGTGGTCTAACCTTGCAATTTACACTCCTGGCTCAAGCTTTCAGTAA 651 0.4854 MQDPTIFQPVKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNNTKRPATSSPSPSPSVSSALTAPEPDPTRVYHNPGGQDQRVRNVAGSFSSLLASSGHLGNLLEGLNSNGSNPKTLQMEEFGENVSCSGPMVDPNPGLQMQSNSNAESFLSMQNGDSSCWNGTNGWSNLAIYTPGSSFQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0280 216 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 216 - -
Ssu8g0280 216 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Ssu8g0280 216 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Ssu8g0280 216 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 216 IPR045174 GO:0003700|GO:0006355
Ssu8g0280 216 MobiDBLite consensus disorder prediction 69 100 - -
Ssu8g0280 216 MobiDBLite consensus disorder prediction 61 119 - -
Ssu8g0280 216 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0280 Ssu-Chr8 4804208 4804858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0280 11 140 C2C2-Dof Transcription Factor Family AT1G51700 52.667 1.53e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu8g0280 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0280 - - gmx:100798927 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0280 8 4804208 4804858 Ssu8g0280 8 4804208 4804858 ECH
Ssu8g0280 8 4804208 4804858 Ssu4g3264 4 82274303 82274938 PCT