Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0224 ATGATGGCTGGGAACCCTAACTGGTGGAGCATGCATCCACCATCTTTGATCCCTCCCCAATATGTGCTTCCACCTTCTTCAATTCCTTTTAATTCTTTGACTGAAAATCCTGAGCCTCCTCAGTCATGGAGCCAACTGCTTTTTACTGGATTTCCGGGGGAAGAAGAGAAACTTGGTTTCAATCATTTTCAGCCAAAAAAGTTGGAAAACTGGGATGTCCAAATTCTTAATACTGCTTCCAGAGTTCCTATTCTTGATGTAATAAAGCAAGAAGTTTCTCATCAAAGGGGCAATTTGTACGACCATGGGAGTGAGGAATTTCAGGCTTTTGGACCAGCTGGCTCATCTTGGTCACATATAGTGCCAGTTTCTTCCCCCGGGTCTTGTGTCACTAGCTTGAGTAGTAATAATATATTGGATTTCACTTATAACAAGTCAGATCATAGGAAAAATCTACTACCAGACCAAATATCTGAGTGTAATAGCACACCCACTGTTGGAGCTTATAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAAGCACCTCTTAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAACAGCCCTTCACCAGCTAGTCTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGCACTCAGCTCTCCTTACTTGGACAGTGCATCAAAAAACATGAGGAATCAACAGTCTATACATGGAGAAAGAAATTCTGTTTTTCCAGAGGACCCCGGTCAGCTGTTGAATGACAATAATGGCCTGAAAAGAAAGGGAGCTCCAAAACAgGATGCAGAAGAGAAACCAAAGGACTTGAAGAGTAGAGGGTTGTGCTTGGTCCCCGTGTCTTGTACGCAGCATGTTGGAAGCGAAAATGGGGCCGATTACTGGGCACCCGCATACGGCAGAGGATTTTAA 963 0.4424 MMAGNPNWWSMHPPSLIPPQYVLPPSSIPFNSLTENPEPPQSWSQLLFTGFPGEEEKLGFNHFQPKKLENWDVQILNTASRVPILDVIKQEVSHQRGNLYDHGSEEFQAFGPAGSSWSHIVPVSSPGSCVTSLSSNNILDFTYNKSDHRKNLLPDQISECNSTPTVGAYKKARVQPSSSQAPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDSASKNMRNQQSIHGERNSVFPEDPGQLLNDNNGLKRKGAPKQDAEEKPKDLKSRGLCLVPVSCTQHVGSENGADYWAPAYGRGF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0224 320 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 307 - -
Ssu8g0224 320 Gene3D - 184 249 IPR036638 GO:0046983
Ssu8g0224 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Ssu8g0224 320 CDD bHLH_AtbHLH_like 184 231 IPR045239 -
Ssu8g0224 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 235 IPR036638 GO:0046983
Ssu8g0224 320 MobiDBLite consensus disorder prediction 272 287 - -
Ssu8g0224 320 PANTHER OS05G0228400 PROTEIN 19 307 - -
Ssu8g0224 320 MobiDBLite consensus disorder prediction 241 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0224 Ssu-Chr8 3348691 3351293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0224 1 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 40.663 3.92e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0224 - - gmx:100802121 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0224 8 3348691 3351293 Ssu8g0224 8 3348691 3351293 ECH