Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0202 ATGGGTTTCGGTTGTGGCACGGTGGAGACGGTCCTGTTATTGTTAACACTAATATGCGATCTTGTTCCCACGTCAATGGCTGTGGGCTTTCGGTGTTGGGAAAGAAGCACGTGTGGCGCGTTGGTTGGTTACAGGTCGCGAGGCCCAACTACCTTAGGGGCCATCCAAAGACTCTTCAACGTGACTCGCGTGGCGGACATTCTCGCCGCTAACGGCCTCCCCGAGTGGATCCCACCCAACAATTTCAAGGTGGAGGAGGGTCGCGTTTTGCGGATCCCGTTTGAGTGCGATTGCAGTGGGCCTGGGCTGTATGGTGAGCCCACTAACCCCCCTGTCTACACGGTGCGGAGGGGTGATAATGTTTCTTATATAGTAACGACTGTGTTCTCGGGTTTGGTGGGTTCAAGGGATATCCAATATGGGAATAACATCACCAACTTGGAGAATTTATGGACGGGACAAGAACTGCGAGTGCCACTCCCTTGCAGCTGTGGGCAGGTGAACGGTGTGGATGTGGTTCACTTTGGATTGACGCGGGAATACGGGCGCACGTTGGAACAGATAGCTGATGAGTACCACGTCCCATTGCAAACCATCAGGACTTCCAACCAAGCTACTAATCCTCATCTTATGGCTGGTCGAGCTTTGGATATTCCACTCCCAGTTTGTTCTTCGGTGGTGAGAAAAGACTCATTGGACTACCCTTTGCTTGTTCCAAATGGTTCTTATGTCTACACCGCAAATGGCTGTGTGAGATGCAACTGCGATGCTGCCAAAAACTGGACATTATCATGTGAGCCATCCAAGCTTAAACCAACTAATTGGTCTACGTGCCCATCTATGCAATGTGACAATTCAAGCAACACGTACATTGGTGACACCACATATTCCAGTTCTCACAATCTTGCAATCTGTTCCTACGCTGGTTATGGAAGTCAAACTATCTTCACTACTCTTGCAGCAGAGTCAATTCCTCCCGGTTTAGTGCACGCGCATGACACGAGTAATCATGCTTTAATTAATCTGTTTACTTCTCTTCATAATAGCACCCCCAGTATTCAATTTTATTCCTTTCGGTTGTGTTTGACAAATAATAAGCTAAAATTGCTTAGTATATATGCATTATGCTTCTCTTATAAGAATAACCTTTATTGTTCTCGAGTGTCACTATCTGAGCCAAGATTCTGCTGTTATAAATGA 1200 0.4708 MGFGCGTVETVLLLLTLICDLVPTSMAVGFRCWERSTCGALVGYRSRGPTTLGAIQRLFNVTRVADILAANGLPEWIPPNNFKVEEGRVLRIPFECDCSGPGLYGEPTNPPVYTVRRGDNVSYIVTTVFSGLVGSRDIQYGNNITNLENLWTGQELRVPLPCSCGQVNGVDVVHFGLTREYGRTLEQIADEYHVPLQTIRTSNQATNPHLMAGRALDIPLPVCSSVVRKDSLDYPLLVPNGSYVYTANGCVRCNCDAAKNWTLSCEPSKLKPTNWSTCPSMQCDNSSNTYIGDTTYSSSHNLAICSYAGYGSQTIFTTLAAESIPPGLVHAHDTSNHALINLFTSLHNSTPSIQFYSFRLCLTNNKLKLLSIYALCFSYKNNLYCSRVSLSEPRFCCYK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0202 399 Pfam LysM domain 113 159 IPR018392 -
Ssu8g0202 399 Pfam LysM domain 184 219 IPR018392 -
Ssu8g0202 399 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 30 322 - -
Ssu8g0202 399 SMART LysM_2 112 159 IPR018392 -
Ssu8g0202 399 SMART LysM_2 184 219 IPR018392 -
Ssu8g0202 399 Gene3D LysM domain 108 168 IPR036779 -
Ssu8g0202 399 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Ssu8g0202 399 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 30 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0202 Ssu-Chr8 3023958 3028433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0202 1 318 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 41.796 7.96e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0202 - - gmx:100811504 523.087