Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0052 ATGGATAAAGTAGGGTGGAGTTTCAAGAGCTTCAGAACATTATTGGTTGTGGGTTCCATAACCTTCcctattttagtcatttttactCTCATACACCAAAACTCAATTTTCGATCTCGTCCAAGGATTTAACGTATTGCCTGGAAGAACCCAGAATACTACTACTGATGTCTTACAACAAGGGACTCAAAatgctactactactattactactactaatGTCTTACAACAAGGGGTTCAAAATGCTACTACTACTAATGTCTTAAAACAAGGGGTTCAAAATGCTACAGTTCAAGCTGGGGGAGAAAAATATCAGAATATTACAGAGTCATCTGTAGATAAGATGTTGCgagacaaaaatcaaaatgctACACCTGGGATCTTAGAAGAACAAGCTCAGACACAGACAATCTCAGATATTGGGCCAAAGAATCATTCTTTTGAAGATGGGAAGAATGTTCCATCCCTATCTACTACTACCATTGCTAACAAACTCCTTGATGGACTTCTAGTTTCCACATTTGATGAAGCATTGTGCTTAAGTAGATATCAATCTTACTTGTACCGCAAAGCTTCCCCTCATAAACCTTCTAAATATCTGATATCCAAGCTACGAAACTATGAACATCTTCATCAAAGTTGTGGACCTTATACCAAACCCTAcaacaaaatcatgagaaaggGCGCAAAAATTAGCAAAAACGATGCTAGTACAAAGTGCAAATATCTTGTCTGGACAGCTTCCAATGGCTTAGGGAACAGGATGGTAACCTTGGCGGCAGCATTTCTTTACGCTATCCTCACAGACCGTGTTCTACTTGTCAGATTTGGGGCTGATATGTTTGGTCTCTTTTGCGAGCCATTTCCTGATTCCTCATGGTTATTGCCCAGAAATTTTCCTTATTGGAAAGATCAGAAACATATTGAAACTTATGAAAGCATGTTAATGAATAACAAGGCAAACAGTTCACAGGAGCTTTTGCTAACATTTCTTATTCTTAATCTACAGCACACCCATGATggtcataataatttttttcattgtgaTCGAAGTCAAGATCTTCTCCAAAAAATCCCTGTGCTGATTTTATGGTCAGATCAATATTTTGTCCCTTCTCTTTTTATGATTCCGTCATTTAGACAAGACCTAAGCAAAATGTTCCCCGAGAAAGACACTGTTTTTCACCATCTGGGACGTTACCTATTTCACCCATCAAATGAGGCATGGGAGCTAATTCGAAAATTCTATGATGCACACCTAGCCAAGGCAAATGAGAGGATTGGCCTGCAGATTAGAGTATTTAATACTCATCGAGCACCACATGAAACCATTATCAATGAAATTATAGCCTGCGCCCTTCAGCATAAGTTGCTGCCTGAATTGGACATGCAAAAATCAGCAACTTCTCCTTTGAAGAAGCCGACCTCAAAAGCTGTTCTAGTAGCATCTTTATACTCAGAATATGGTGAGAAGCTGAGGACTATGTATCAGGCAAATGCAACTGTGACCAGGGAAGTTATAAGAGTTTATCAGCCAAGTCATGAAGAGCGTCAAAAGTCAAATAATGACATGCACAACATTAAGGCATGGACTGAAATATATTTGCTGAGTTTGTGTGATGCCTTGGTTACAAGCCCCAAGTCTACTTTTGGGTATGTTGCTCATAGTCTTGGAGGTTTGAAGCCATGGATTTTGCAGAGGGCACATGGGGAAACCATCCCAGATCCACCTTGTCGACGAGCCAAGTCCATGGAGCCTTGTTTCCATTATCCTCCCAAGTATGACTGTAGGGCCAATAGCACAGTTGATTTTACTTCCCTTTTTCATCATATGAAGCATTGTGAAGATGTATCTAGTGGATTGAGGCTGGTTAACGCTAATCACTAG 1887 0.3794 MDKVGWSFKSFRTLLVVGSITFPILVIFTLIHQNSIFDLVQGFNVLPGRTQNTTTDVLQQGTQNATTTITTTNVLQQGVQNATTTNVLKQGVQNATVQAGGEKYQNITESSVDKMLRDKNQNATPGILEEQAQTQTISDIGPKNHSFEDGKNVPSLSTTTIANKLLDGLLVSTFDEALCLSRYQSYLYRKASPHKPSKYLISKLRNYEHLHQSCGPYTKPYNKIMRKGAKISKNDASTKCKYLVWTASNGLGNRMVTLAAAFLYAILTDRVLLVRFGADMFGLFCEPFPDSSWLLPRNFPYWKDQKHIETYESMLMNNKANSSQELLLTFLILNLQHTHDGHNNFFHCDRSQDLLQKIPVLILWSDQYFVPSLFMIPSFRQDLSKMFPEKDTVFHHLGRYLFHPSNEAWELIRKFYDAHLAKANERIGLQIRVFNTHRAPHETIINEIIACALQHKLLPELDMQKSATSPLKKPTSKAVLVASLYSEYGEKLRTMYQANATVTREVIRVYQPSHEERQKSNNDMHNIKAWTEIYLLSLCDALVTSPKSTFGYVAHSLGGLKPWILQRAHGETIPDPPCRRAKSMEPCFHYPPKYDCRANSTVDFTSLFHHMKHCEDVSSGLRLVNANH 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0052 628 PANTHER FUCOSYLTRANSFERASE 2-RELATED 118 627 IPR004938 GO:0008107|GO:0016020|GO:0042546
Ssu8g0052 628 Pfam Xyloglucan fucosyltransferase 158 597 IPR004938 GO:0008107|GO:0016020|GO:0042546
Ssu8g0052 628 Gene3D - 237 290 - -
Ssu8g0052 628 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE-LIKE PROTEIN 118 627 - -
Ssu8g0052 628 Gene3D - 409 566 - -
Ssu8g0052 628 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE-LIKE PROTEIN 8 70 - -
Ssu8g0052 628 PANTHER FUCOSYLTRANSFERASE 2-RELATED 8 70 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0052 Ssu-Chr8 861226 863664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0052 158 624 Xyloglucan Fucosyltransferase1 AT2G03220 51.271 1.17e-168 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0052 K13681 - gmx:100799776 932.939