Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2650 ATGGAGAGTGGGTGGAAGCCTGAGGTTGAGATGTCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGATGCAGAAGGTACTGGACCAAAGGAGGGTCTCTTCGCAATGTGCCTGTTGGTGGTGGTTACAGGAAAAACAGAAGAGGTAACAAGACCTTATTGAGACAATCCATTGATGgtttaactttcaaaaattcACCTTGTGGCAATGCCACAGATCATAATAATAACCCTGTTGGGCATTCTTATGATCCTAGAATAAGGACTTCTTCAGCTTCTAGCTCCTCCTCAGTGGTGAGTGATGGACCAGATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAAGCCCAATTCTGAAGCTGGGCTTGAGGGTAATCCAGATCAAGTGCAAACAGCTTTTGATCCTTGTCTAGAAAGTAATTCAAGGCTATCAAACACAGAAGTTGGCCCAAGTACGTTGCCTGAAGAACTTGGTCTTATTGGGTGTTTGAGTCTTCCTGAACAACCATCCACACAAACTAGCGagggtaataataataataatcaaatgtGCTATGGTGAGTTCAACTCTATGCAGACGCTTCAAAAAGATGGAATTGAGCAATGTAGTACTCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCGGGTGAAGAGGAAGCCCCACATGATCATATGATGTGGTCAAATTCTGAGATGATGATAAATCATGCATTTCAAGTCACACAACCGCCACTTCTTGGACCTGAAGTTCATGATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCAAGGGATGCTTCTTTTTCCGGGCcttga 900 0.4156 MESGWKPEVEMSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGYRKNRRGNKTLLRQSIDGLTFKNSPCGNATDHNNNPVGHSYDPRIRTSSASSSSSVVSDGPDIDLALVYANFLNQKPNSEAGLEGNPDQVQTAFDPCLESNSRLSNTEVGPSTLPEELGLIGCLSLPEQPSTQTSEGNNNNNQMCYGEFNSMQTLQKDGIEQCSTHGGAMNFELPPLPGEEEAPHDHMMWSNSEMMINHAFQVTQPPLLGPEVHDDADLLIGNWSPFDLPRDASFSGP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2650 299 Pfam Dof domain, zinc finger 13 67 IPR003851 GO:0003677|GO:0006355
Ssu7g2650 299 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 295 - -
Ssu7g2650 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 295 IPR045174 GO:0003700|GO:0006355
Ssu7g2650 299 MobiDBLite consensus disorder prediction 84 119 - -
Ssu7g2650 299 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Ssu7g2650 299 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2650 Ssu-Chr7 53004742 53005641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2650 5 294 C2C2-Dof Transcription Factor Family AT3G52440 38.816 3.12e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu7g2650 zf-Dof 9.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2650 - - gmx:100787193 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2650 7 53004742 53005641 Ssu7g2650 7 53004742 53005641 ECH