Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2034 ATGAGCAGTTCTCAAAATCCAAAACACGAAGATGCCGAACCTCCACAACTACAGAGAACATGCGACTATTGTGGGGGCTACACGGCTCTGCTATATTGCAGAGCCGATTCTGCGAGGCTCTGTTTCTTCTGTGATCGCAAGGTGCACTTCCCCAACCAGCTTTTCTCGAAGCACACTCGCGCTCGGCTCTGTGATGCGTGCGGCGATTCCCCTGCCTCGGTGCTCTGTTCTGCTGAGAACTCTGTTCTGTGCCATAATTGTGACTGCGAAAGGCACAGCCACTCGCTGTCTCAGGTGCACCAACGGAGGCCCCTCGAAGGCTTCTCGGGGTGCCCTCCTGTCACTCAGTTGTTGACAATTCTGGGTCTTAGTGAAAAATCTCTGCTTCCAACTGAGGGCAGTTCCCAGATTGAAGGCCTTTCGGATTCGCACGTGTGGAGTGCTCCTTCTGTTGTTGATCTTCAAGATTTGATAACCTCCACAGCTTCTTCTCATAAGAATCGTAAGGGTGCGTGCGGGAGACAGAAAGAAGAGATTCTTAGTCAGCTCCGAGAACTAATAAAGTTGGAGCCGGACTTGATTCATGCAGAAGTAGATGCTGAACGACAAGGGCAATTTGGAAATTTGGCTTCTGGTTTTGAACGTGACGTAGAGGCTAATATGTTTCCTTCTTATGAGGCAGGTGTCTTTTGTTGGCATGGAGAAAGCAGTGATCCTGCAAATCAAATTGTTCCTTCTCATACGTCACTGAGAGATTATGGCGAGCTAGTTTCAGCTAAAGATCCAAGTTTTACCATCCCTGGGACTCACGCCAATTGTAACAACGAAGGGAAACCATCAAATTCTTTTAACGCTGAAAACTTATCTCCTACTCCTAAAGCTACTCCATATGAGTTAACAAGTCATGAAAGAGATTCAGCATTATTGCGATacagagagaagaagaaaaccaGAAGGTATGACAAGCACATCAGATATGAATCACGAAAAGTTCGGGCAGAGAGCAGGATGCGAATTAAGGGTCGGTTTGTCAAAGATGAAACACAAAAGTAA 1053 0.4596 MSSSQNPKHEDAEPPQLQRTCDYCGGYTALLYCRADSARLCFFCDRKVHFPNQLFSKHTRARLCDACGDSPASVLCSAENSVLCHNCDCERHSHSLSQVHQRRPLEGFSGCPPVTQLLTILGLSEKSLLPTEGSSQIEGLSDSHVWSAPSVVDLQDLITSTASSHKNRKGACGRQKEEILSQLRELIKLEPDLIHAEVDAERQGQFGNLASGFERDVEANMFPSYEAGVFCWHGESSDPANQIVPSHTSLRDYGELVSAKDPSFTIPGTHANCNNEGKPSNSFNAENLSPTPKATPYELTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDETQK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2034 350 MobiDBLite consensus disorder prediction 272 296 - -
Ssu7g2034 350 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Ssu7g2034 350 CDD Bbox1_BBX-like 21 60 - -
Ssu7g2034 350 MobiDBLite consensus disorder prediction 272 297 - -
Ssu7g2034 350 CDD Bbox1_BBX-like 63 105 - -
Ssu7g2034 350 Pfam CCT motif 304 346 IPR010402 GO:0005515
Ssu7g2034 350 SMART bboxneu5 16 63 IPR000315 GO:0008270
Ssu7g2034 350 SMART bboxneu5 64 105 IPR000315 GO:0008270
Ssu7g2034 350 ProSiteProfiles CCT domain profile. 304 346 IPR010402 GO:0005515
Ssu7g2034 350 ProSiteProfiles Zinc finger B-box type profile. 59 105 IPR000315 GO:0008270
Ssu7g2034 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 16 347 - -
Ssu7g2034 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 16 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2034 Ssu-Chr7 40462854 40465824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2034 10 319 C2C2-CO-like Transcription Factor Family AT2G47890 37.920 1.34e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu7g2034 CCT 2.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2034 - - gmx:100798117 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2034 7 40462854 40465824 Ssu7g2034 7 40462854 40465824 ECH
Ssu4g0696 4 10881859 10885252 Ssu7g2034 7 40462854 40465824 PCT