Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1843 ATGGCTAGGAAAAAAGTGAAACTTGCCTTGATCTCCGATGAAACAGCAAGGAAAGCCACatataagaaaaggaagaagggtCTCATCAAAAAGGTGAATGAACTCACCATTCTTTGCGGGATCCCAGCCTGTGCTATAATTTCTAGTCCTTTTGATCCTAAGCCAGAGGTTTGGCCAGATCCAGAGGGCGCCAACGAAATGATTCAGAGGTATCTGAATGCATCTGTTTTAGATGAAAGCAAGAATGTCAACCAAGAAAGCTTCATCATGCAGAGGATTGCCAAAGCCCGTGAACAACTGAAGAAGCAGCGTCTGGAGAATCGTGAGAAGGAGATGACCTTATCCTTGTTCCAGTACATGGAAGGTAAAGACTTGCCAGATACCTTTGAAGAACTGAAAGAACTCGACAAGCTGATTGAGAAGAATATGAAGGAGATTGAAAACAAATTGGCCACACTTAATTCGTTGATTGAGGGCGCGTcctcctctccctctccctctccatTTCGAATTTTGGTCTCCACTTGCTCTTGCACAAACCCTACCCCTCATCCTCTCTTTGCTGTTGCTGGGCACGAAGATGAAAGTGAACATCTTGCaaaaggaaaaaaaaagaatgttttgCTTGACAAAGGTCTCTACCCGGATATCTGCTGTGCTTCTAAAAAGAATGGCACGCTGTTGGTTCGTGGACTTGGGATGCCCAGGATGAAACGTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGGGATGACTGCCCACTGA 789 0.4157 MARKKVKLALISDETARKATYKKRKKGLIKKVNELTILCGIPACAIISSPFDPKPEVWPDPEGANEMIQRYLNASVLDESKNVNQESFIMQRIAKAREQLKKQRLENREKEMTLSLFQYMEGKDLPDTFEELKELDKLIEKNMKEIENKLATLNSLIEGASSSPSPSPFRILVSTCSCTNPTPHPLFAVAGHEDESEHLAKGKKKNVLLDKGLYPDICCASKKNGTLLVRGLGMPRMKRVGFVGWPLMDVVLTVNFLGMTAH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1843 262 Coils Coil 93 113 - -
Ssu7g1843 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu7g1843 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu7g1843 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu7g1843 262 PANTHER MADS BOX PROTEIN 2 152 - -
Ssu7g1843 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Ssu7g1843 262 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Ssu7g1843 262 Gene3D - 13 152 IPR036879 GO:0003677|GO:0046983
Ssu7g1843 262 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Ssu7g1843 262 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 152 - -
Ssu7g1843 262 Coils Coil 129 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1843 Ssu-Chr7 37166755 37174375 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1843 1 194 MADS-box Gene Family AT5G26630 40.609 1.60e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu7g1843 SRF-TF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1843 - - gmx:100792290 239.965