Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1755 ATGATTGGGGACGATGCGCAGAAGAAGAGGAGAATCGCCATCATTGGCGTCTCTACCATCTTCCTAGTGGCTATGGTCGTTGCCGTCACAGTTGGCGTCAACTTCAATCTGAACGGTTCCAACGGCGACGCAGACGATAACAAGACCCACGTTACTTCCACTGTGAAAGCGGTGAAAACCCTTTGCGAGCCCACAGATTACAAGACAGAATGTGAGAAAAGCCTGCGAGCAGAAGCTGGGAACACCACGGACCCCAGAGAACTCATTAAAATTGCATTCAACGTAACCATTAAAGAAATAGGTAATGGACTCAAAAAAACAGGTCTCATGCACGAGGTTGAGAAGGACCCCAGGGCCAAGATGGCACTTGACACATGCAAGCAACTCATGGATCTTTCCATTGGAGAATTCGAAAGGTCACTTGAGAAAATGGGCAAGTTTGATCTCGACAATCTCGACAACATCCTCAATAGTTTAAAGGTTTGGCTCAGTGGTGCAATCACATACCAAGAGACTTGCTTGGACGGCTTTGAGAACACCACCAACGAAGCagggaagaaaatgaagaacGTGTTAACGAGTACCATGCACATGAGTAGCAATGCCCTTGCCATCATCTCAGAACTTGCAAACACTGTCTCGCAGATGAATTTGACAAAAGATGGGCGTCGCCTTGTTGAGGATTCTGGGGAGGAACGTGTTTTTGCTCACGATGACGTTGAGGTTATTCCCTCCTGGTTTGATGATGGTGTCGGTGTTCGTAGACTCCTTCATGAAAGTCCGCACAAAGCCAAGCCTAACGTGGTTGTGGCCAAAGATGGTAGTGGAAAGTACAAGAGCATCAACCACGCATTGAAGCAGGTGCCTGAGAAGAACCAAAAGCCATTCGTGATTTACATTAAGGAGGGTGTTTACCATGAGTATGTTGAAGTTACTAAGAACATGACCCACGTGGTGTTTGTCGGTGATGGTGGCAAAAAGACACGAATTACGGGCAACAAAAACTTCATAGATGGAGTTAATACTTACAGAACGCCCACTGTTGCACAAGGTCGAAAAGAGAGGCACCAACCTTCGGGAATAGTGATCCAAGGGGGCTCTATTGTGTCCGATCATACAGTGAAGTTTGATAACAGGGCTTATCTAGCCCGTCCATGGAAGAATTACTCAAGGGCCATCTTCATGGATACCTATATTGGGGATTTGATTCAACCTGATGGGTATATGCCATGGCAAGGACCGAGTGGTCTTTCAGGTATGAAAACTTGTTTCTATGCCGAGTACAATAACACTGGTCCTGGTTCAAACAAATCCAAGCGTGTAAAATGGCATGGGATCAAGACCCTCACATCACAATCAGCATCCCGTTACTTACCATACACATTTTTTCATGGAGATGATTGGATTAAAGTTACTAGGATTCCTTACTCCTCTGCCGTCACCGCCCCCAAGcactaa 1458 0.4554 MIGDDAQKKRRIAIIGVSTIFLVAMVVAVTVGVNFNLNGSNGDADDNKTHVTSTVKAVKTLCEPTDYKTECEKSLRAEAGNTTDPRELIKIAFNVTIKEIGNGLKKTGLMHEVEKDPRAKMALDTCKQLMDLSIGEFERSLEKMGKFDLDNLDNILNSLKVWLSGAITYQETCLDGFENTTNEAGKKMKNVLTSTMHMSSNALAIISELANTVSQMNLTKDGRRLVEDSGEERVFAHDDVEVIPSWFDDGVGVRRLLHESPHKAKPNVVVAKDGSGKYKSINHALKQVPEKNQKPFVIYIKEGVYHEYVEVTKNMTHVVFVGDGGKKTRITGNKNFIDGVNTYRTPTVAQGRKERHQPSGIVIQGGSIVSDHTVKFDNRAYLARPWKNYSRAIFMDTYIGDLIQPDGYMPWQGPSGLSGMKTCFYAEYNNTGPGSNKSKRVKWHGIKTLTSQSASRYLPYTFFHGDDWIKVTRIPYSSAVTAPKH 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1755 485 SUPERFAMILY Pectin lyase-like 264 478 IPR011050 -
Ssu7g1755 485 Pfam Pectinesterase 349 466 IPR000070 GO:0030599|GO:0042545
Ssu7g1755 485 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Ssu7g1755 485 PANTHER PECTINESTERASE 348 482 - -
Ssu7g1755 485 PANTHER PECTINESTERASE 10 349 - -
Ssu7g1755 485 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Ssu7g1755 485 CDD PMEI-like_3 60 211 - -
Ssu7g1755 485 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Ssu7g1755 485 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Ssu7g1755 485 Gene3D - 349 482 IPR012334 -
Ssu7g1755 485 Gene3D - 264 348 IPR012334 -
Ssu7g1755 485 PANTHER PECTINESTERASE 348 482 - -
Ssu7g1755 485 PANTHER PECTINESTERASE 10 349 - -
Ssu7g1755 485 SMART PMEI_2 53 205 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1755 Ssu-Chr7 35932113 35934180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1755 346 482 Carbohydrate Esterase AT3G05610 45.000 1.16e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1755 K01051 - gmx:100794799 540.806