Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1492 ATGGACACAGCTCAGTGGCCACAGgAGATGGTGGTGAAACCATTAGAAGATATAGTGGTGACAAAGGCTGCAGGTGCGGTGGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGATGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCTAGGAAGAACAAGAGATCTTCTGCTTCTTGTTCCACAcccaataatagtaataataattcaacCAATAAGAGGCTTCCTGATCTGCTCATCACACCTCCAACTTTGTCACACATTCAAAACCCTAAGGATAATAATATTCGTCAAGGCCAAGATCTCAATCTGGCCTTCCCATCCACCACCCCAGATTTTAGAAATATCTCTGAATTCGtccaacaaaataacaataatagttgCAGCAGCATGtcagcttcttcttcttcttcttctacttcaaccaccaccactactacagCTACAGCTACAACTTCTCACCTTTCTGCATTGGAGCTTCTTACTGGGATCACTTCAAGTTCCACTGGCTTGAATTCTTTCATGCCTGTGGTGCCAGTTCCAGCTGATCCAAATTCTGTCTACGCTTGTGGGTTTCCTCTGCAAGATTTCAAGCCAATCCTGAATTTCTCTTTAGATGGGATTGGAAACGGGTACGCAAGCATTCAGAATGTTCAAAGTGGGAGGCTCTTGTTTCCGTTTGAGGACTTAAAACAGGTTTCTAGCACCACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACTGGCTATTGGACTGGAATGCTAGGCGGAGGATCATGGTTTAGTTGGAGGTGTCAGCTGCAGCAAGATTCATCTACGCATTAA 942 0.4087 MDTAQWPQEMVVKPLEDIVVTKAAGAVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNIPVGGGSRKNKRSSASCSTPNNSNNNSTNKRLPDLLITPPTLSHIQNPKDNNIRQGQDLNLAFPSTTPDFRNISEFVQQNNNNSCSSMSASSSSSSTSTTTTTTATATTSHLSALELLTGITSSSTGLNSFMPVVPVPADPNSVYACGFPLQDFKPILNFSLDGIGNGYASIQNVQSGRLLFPFEDLKQVSSTTTTMDQKQQGDSTGYWTGMLGGGSWFSWRCQLQQDSSTH 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1492 313 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 296 - -
Ssu7g1492 313 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Ssu7g1492 313 MobiDBLite consensus disorder prediction 88 115 - -
Ssu7g1492 313 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Ssu7g1492 313 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Ssu7g1492 313 MobiDBLite consensus disorder prediction 80 115 - -
Ssu7g1492 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 296 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1492 Ssu-Chr7 31585465 31587580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1492 1 299 C2C2-Dof Transcription Factor Family AT4G24060 43.059 1.48e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu7g1492 zf-Dof 5.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1492 - - gmx:100782268 462.225