Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0921 ATGAAAGCGAAGATGGTGGTGAAAAACGGAGTCATTGCGCCAATGGCTTGGTTGAAGGACACAGGGAGAGTCCAGGTGTTCATCGGACGGTGGCAAGGCAAGAACATCGACAAAGGACTTGAGGAACTCGTCGAACTTGGAACGAAGCCAGGTGAGGTAGATGGACTCGGATTGGTTGTCGCCAGAGGGAGCAGTGGTGACGGCGGTGGAGGAAGGGAGCTTAGGGAGGAGGGGGAGGAAGAAGGAGAGGAGCGAGAGGAAGGATTCAAGGATGAAGTTAAGGAGGAGAGGGAGATTGCAATGAAATGCACCCGCACGATGGTCTGTGGTGATGAAAATGATGGAAGAAGAGGGCACGGTGCACGTGTCGAGCAGTGGGTGCTGGAGTGTCTGGTTAAATCAGTTCACACGTACTTTTTAACGGTGGCGCACCAAAGGGGTTTAGGTTCAGGTTCGGGCAAGCTCGCGGCGGAGCAAGGCGGCGATGAGGAAGCGGAAGACACTTTGGGACAAGAGTATGGAAGCTCGGAAGGGACTCTAGGTTCGGTTCCGAGGCATGAGGTGTCACCCTCGGCTTCTGCCCAAACCGAGTGGGTCCCGGCAAGTAGTTTTCCTATGATGTCACGTTTTATGCAtgtatcttcttcttcttcttcttcaggTTTGTCTTCTTCTTCTGGGCCTGCTCTTTTGGGCCCGGCCTCTGGCTGGGTTGGCCACAAAAGAGCGCGTGAGGACGACACGGGTGCGAGTGCGGGTGGTTCTTCGCAGACACAAGCGGGTGAAAGTGAAAGTGCGTCGCAGGAAGAGAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGACCGTGGGGGAAATGGGCGGCGGAGATTCGCGACCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACCTTCGACACCGCCGAGGCTGCAGCCAGAGCTTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAGCTCAACTTCCCCGAAAACGTTGCCGCGCTTCGACCTCCCGTTCCCGCTTTTCCGCCGAGTGCGCTTGCCGGCGGTTCCGGGTCCGCGGTGGCGAGTTTTTCGCCGGCGGTCATGCAGGGGGCGCCGCCGCTTCAGGGCTCCCCTGATTTGATGCGAGACTATTGGGGTTATTCTCAGCTGCTGAGGAGCGCAGGGGACTTCCATGGACTCGAGCAGTGGTTCTTTGATTCGCAAATGGCAGCGCTTCAATCTTCGTCTTCCCTGTTATCGCCGTTAACGTCGTTTTCTTCGTCGCCACCTGCTTTTTCGCCGTCCTCTGCTTCGCTTCCCCTGTTTTCTACCCAGCAAGCGGGGGTTTTCCGGCCGCCGGGAGAGCAGCCTCACGGCGGAAGCCacggtggtggtgatggtggcggaTCAGAGTTTCCACCTTCAACATGGTCAGATACTAGTGGCAGTGGCTATCCTCCGCCACCTGGTTGA 1473 0.556 MKAKMVVKNGVIAPMAWLKDTGRVQVFIGRWQGKNIDKGLEELVELGTKPGEVDGLGLVVARGSSGDGGGGRELREEGEEEGEEREEGFKDEVKEEREIAMKCTRTMVCGDENDGRRGHGARVEQWVLECLVKSVHTYFLTVAHQRGLGSGSGKLAAEQGGDEEAEDTLGQEYGSSEGTLGSVPRHEVSPSASAQTEWVPASSFPMMSRFMHVSSSSSSSGLSSSSGPALLGPASGWVGHKRAREDDTGASAGGSSQTQAGESESASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAALRPPVPAFPPSALAGGSGSAVASFSPAVMQGAPPLQGSPDLMRDYWGYSQLLRSAGDFHGLEQWFFDSQMAALQSSSSLLSPLTSFSSSPPAFSPSSASLPLFSTQQAGVFRPPGEQPHGGSHGGGDGGGSEFPPSTWSDTSGSGYPPPPG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0921 490 MobiDBLite consensus disorder prediction 233 281 - -
Ssu7g0921 490 Gene3D AP2/ERF domain 276 336 IPR036955 GO:0003700|GO:0006355
Ssu7g0921 490 ProSiteProfiles AP2/ERF domain profile. 277 334 IPR001471 GO:0003700|GO:0006355
Ssu7g0921 490 MobiDBLite consensus disorder prediction 250 266 - -
Ssu7g0921 490 Pfam AP2 domain 277 326 IPR001471 GO:0003700|GO:0006355
Ssu7g0921 490 PRINTS Ethylene responsive element binding protein signature 300 316 IPR001471 GO:0003700|GO:0006355
Ssu7g0921 490 PRINTS Ethylene responsive element binding protein signature 278 289 IPR001471 GO:0003700|GO:0006355
Ssu7g0921 490 PANTHER DNA-BINDING DOMAIN 167 451 IPR044808 GO:0003700|GO:0009873
Ssu7g0921 490 MobiDBLite consensus disorder prediction 443 490 - -
Ssu7g0921 490 CDD AP2 285 336 IPR001471 GO:0003700|GO:0006355
Ssu7g0921 490 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 167 451 - -
Ssu7g0921 490 MobiDBLite consensus disorder prediction 62 92 - -
Ssu7g0921 490 MobiDBLite consensus disorder prediction 149 194 - -
Ssu7g0921 490 SMART rav1_2 277 340 IPR001471 GO:0003700|GO:0006355
Ssu7g0921 490 SUPERFAMILY DNA-binding domain 277 335 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0921 Ssu-Chr7 20037410 20047366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0921 268 337 AP2-EREBP Transcription Factor Family AT2G33710 78.571 4.61e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g0921 AP2 1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1841 4 33588940 33598925 Ssu7g0921 7 20037410 20047366 PCT
Ssu7g0921 7 20037410 20047366 Ssu7g0921 7 20037410 20047366 PCT