Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0441 ATGCTTAAAGTCAATGCTCACTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGACGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACAAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCATGTGCTGTCCACCCTCAAATGGAAGATGCACCCCGTGACCCCTCTCTCGTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGGCTGTGTTTTTAGATTCAAGATTTGTTGGGTGTCTTCCTTCCGTTCTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAGCACACTGGTGGGATGGAATACAAAAATCAGCTTCTTAGTGTTCTCAAAATTAACAAGGAGAAAGTAGATGAATGTTATAATGGCATTCTCCAACTCTCAAATGCCAATAATTATGCTCATGACAACGCTAGCAAGCGCAAGTATGAGCAAATCCCAGGCAGCCCAAGTGGCGTAATTGATGCTGCTTTTAGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCACCACCGGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTAA 813 0.449 MLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWTIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELHVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLAVFLDSRFVGCLPSVLATATMLHVIDQIEHTGGMEYKNQLLSVLKINKEKVDECYNGILQLSNANNYAHDNASKRKYEQIPGSPSGVIDAAFSSDGSNDSWAVGSSLYSPPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0441 270 Gene3D - 1 94 - -
Ssu7g0441 270 SUPERFAMILY Cyclin-like 97 206 IPR036915 -
Ssu7g0441 270 Pfam Cyclin, N-terminal domain 1 93 IPR006671 -
Ssu7g0441 270 Pfam Cyclin, C-terminal domain 96 207 IPR004367 -
Ssu7g0441 270 SUPERFAMILY Cyclin-like 1 94 IPR036915 -
Ssu7g0441 270 CDD CYCLIN 1 86 IPR013763 -
Ssu7g0441 270 PANTHER CYCLINS 1 246 IPR039361 -
Ssu7g0441 270 SMART cyclin_7 1 87 IPR013763 -
Ssu7g0441 270 Gene3D - 95 184 - -
Ssu7g0441 270 PANTHER CYCLIN D3.1 PROTEIN 1 246 - -
Ssu7g0441 270 SMART Cyclin_C_2 96 224 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0441 Ssu-Chr7 8356897 8358134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0441 1 260 Core Cell Cycle Gene Families AT5G67260 53.008 2.21e-90 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0441 7 8356897 8358134 Ssu7g0441 7 8356897 8358134 ECH
Ssu5g0288 5 6083306 6085008 Ssu7g0441 7 8356897 8358134 ECH
Ssu2g2528 2 84220348 84221597 Ssu7g0441 7 8356897 8358134 PCT