Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0428 ATGGCGCTTTTCCGATCATCCAAAAGATTCCCCACCCTCAACCCCCTTCCCCTCACAAAACCTTCGCCAACTTCAAATTTCGACCACCATCCCTCCACACCCACAATCCAACTCACCCAAACCCCCTATGGGCCTCCAGAAACCCACGCATTCGCCTTCCACACGGCCCAACCTCGGCCCACCCCCGACGCCGAAACAATCTGCAAAATCTTATCCAACACCCGCGACTCCACCGTCGAGGCCTCTCTCGCCGCCGTTCCGGCGAAGCCGCCGCCGGAGCTGGTCCTCGAGGTCCTCAACAAACTTGGCAACGCCGGTGCTCTCGCGCTCTCGTTCTTCCGTTGGGCTGAGAAACAAAGGGAATTCAAACACACCACAGATACCTTCCACGCGTTGATCGAGGCACTGGGTAAGATCAAACAGTTCAAAATGATTTGGACTCTGGTGAACGACATGAAGCGTCGAAAATTGTTGACTTCTGACACTTTTGCCCTCGTCGCTCGACGATACGCGAGAGCGGGGAAGGCCGAGGAAGCAGTTCAGACATTCGAGAAGATGGAGCATTACGGTTTGAAGCCGCACGTGTCGGATTATAACAGGTTGATCGATGTGTTATGTAAATCCAAGTGCGTCGAGATGGCACACGAGGTGTTTGATAAAATGCGGCACTTAAAGTTGGACCCTGACATCAAGTCCTATACCATCTTATTAGAAGGGTGGAGTCAGCAGCAGAACTTGATGAAAGTCAACGAGGTGTGTAGGGAGATGGAGAATGAGGGGTTTCAGCTTGATGTTGTTGCTTATGGGATAATCATCAATGCGTATTGTAAGGCTAAGAAATTTGACGAGGCTATTGGGTTGTTCCGTGAGATGAAAGCCAAGAGTGTGAGGCCTAGTCCCCATGTGTATTGTACTCTGATTAATGGGTTGGGTTCTGATAGGAGATTGGATGAAGCTCTTGAGTTTTTTGAGGTGTCAAAGGCTAGTGGTTTTGCACCGGAGGCTCCCACTTACAATGCTGTTGTTGGGGCTTATTGCTGGTCTATGCGGATGGATGATGTGTATAGGATGGTTGGTGAGATGAAAAAGTGTGGGATTGGTCCGAATTCTCGAACGTGTGATATCATACTTCATCATTTGATAAAGGGTCGGAGGATTGAAGAAGCTTGCTCGGTTTTCCGGAGGATGAGCGGCGAGTTTGGGTGTGAGCCAAGTGTGAGTACGTACGAGATCATGGTGAGGATGTTCTGTAATGAAGAGCGGTTGGATACGGCGATGGCGGTTTGGGATGAGATGAAAGGGAAGGGAATTCTTCCTGGAATGCACATGTTCTCCACGTTGATCTGTGCCTTGTGCCATGAGAGTAAGTTGGATGAAGCGTGTAAGTACTTTCAAGAAATGTTGGATGTGGGCATTCGGCCTCCTGCCAAGATGTTTAGTACCTTGAAGGAAGCTCTAGTTGATGCGGGGATGGAGAATACTGCCATGCATTTCGCTTTGAAAATTGATAAACTCAGGAAATCTCCATTAGTTGCTTGA 1539 0.4932 MALFRSSKRFPTLNPLPLTKPSPTSNFDHHPSTPTIQLTQTPYGPPETHAFAFHTAQPRPTPDAETICKILSNTRDSTVEASLAAVPAKPPPELVLEVLNKLGNAGALALSFFRWAEKQREFKHTTDTFHALIEALGKIKQFKMIWTLVNDMKRRKLLTSDTFALVARRYARAGKAEEAVQTFEKMEHYGLKPHVSDYNRLIDVLCKSKCVEMAHEVFDKMRHLKLDPDIKSYTILLEGWSQQQNLMKVNEVCREMENEGFQLDVVAYGIIINAYCKAKKFDEAIGLFREMKAKSVRPSPHVYCTLINGLGSDRRLDEALEFFEVSKASGFAPEAPTYNAVVGAYCWSMRMDDVYRMVGEMKKCGIGPNSRTCDIILHHLIKGRRIEEACSVFRRMSGEFGCEPSVSTYEIMVRMFCNEERLDTAMAVWDEMKGKGILPGMHMFSTLICALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMENTAMHFALKIDKLRKSPLVA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0428 512 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 61 509 - -
Ssu7g0428 512 MobiDBLite consensus disorder prediction 19 44 - -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Ssu7g0428 512 Pfam PPR repeat family 264 310 IPR002885 -
Ssu7g0428 512 Pfam PPR repeat family 368 418 IPR002885 -
Ssu7g0428 512 Pfam PPR repeat family 195 239 IPR002885 -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Ssu7g0428 512 PANTHER OS01G0505500 PROTEIN 61 509 - -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 337 369 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 443 474 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 302 333 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 408 439 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 198 229 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 162 193 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Ssu7g0428 512 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Ssu7g0428 512 Pfam PPR repeat 128 156 IPR002885 -
Ssu7g0428 512 Pfam PPR repeat 337 366 IPR002885 -
Ssu7g0428 512 Pfam PPR repeat 168 190 IPR002885 -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Ssu7g0428 512 Gene3D Tetratricopeptide repeat domain 96 256 IPR011990 GO:0005515
Ssu7g0428 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Ssu7g0428 512 MobiDBLite consensus disorder prediction 1 44 - -
Ssu7g0428 512 Gene3D Tetratricopeptide repeat domain 257 325 IPR011990 GO:0005515
Ssu7g0428 512 Gene3D Tetratricopeptide repeat domain 399 470 IPR011990 GO:0005515
Ssu7g0428 512 Gene3D Tetratricopeptide repeat domain 326 398 IPR011990 GO:0005515
Ssu7g0428 512 Pfam PPR repeat 435 467 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0428 Ssu-Chr7 8065640 8067178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0428 56 509 Glycosyltransferase AT1G05670 24.130 3.16e-27 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0428 7 8065640 8067178 Ssu7g0428 7 8065640 8067178 ECH