Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0425 ATGGCGGGTTTTGGCGGGAAAAAGGTGCACCAAATGATCACCGGTTTCGGCGGCAGTGGACTCGGCCAGGTCGTAATCGCCGTCGCCGTTTCCTTCCTCGTCCGCATCTTCTCCGCTCCCGGCCCCGCCCTTTCGCTGGAAAACGATATCGACGATGCGCCGGACAACGATTCCGCCGACGCTGACGCTCCGCCCTCCGGAAAGATCACGCCAGTCACAATCCGTTGGAGAAACATCAATTGCTCCCTTTCCGATAAATCCTCCAAGTCCGTGAGGTTTCTGCTAAAAAATGTGAGTGGTGAGGCGAGGCCTGGAAGGTTATTAGCCATAATGGGGCCTTCAGGTTCAGGGAAGACAACGTTGCTTAATGTTCTTGCAGGTCAGCTCGCGGCATCTCCTTGGCTGCAGTTGAGTGGCGTTTTGGAGTTCAATGGAAAGCCTGGTTCTAAGAACGCTTACAAGTTTGCGTATGTGAGACAGGAGGATCTCTTTTTCTCGCAGCTCACCGTGCGGGAGACATTGTCTCTTGCTACAGAACTCCAGCTTCCCAACATATCTACTGCGGAAGAGAGGGATGAATTCGTGAACAATCTCCTTTTCAAACTAGGCTTGgtTAGTTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTATCCTTGGCATGTGAACTGCTTGCAAGCCCATCTGTTATATTTGCTGATGAACCCACAACGGGACTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACTCTCCAACAACTTGCGCAAGATGGTCATACTGTAATTTGTTCCATACATCAGCCAAGAGGTTCAGTGTATGGTAAATTTGACGACATCATCTTGCTAACAGAGGGTTCACTTGTTTATGCTGGTCCTGCTCGTGATGAACCACTGGCATACTTCTCAAAATTTGGGTACCACTGCCCAGATCATATAAATCCTGCTGAATTTTTGGCTGATCTTATATCCATAGACTACAGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGGATTGATGGTCTTGTTGAGTCATTCTCACAAAGACTATCTGCAGTTATATATGCAACTCCAATTACTATAGATGATCTCTCAAACAGTAGAAAGAAAATCAGCAAGAGGGCTGTAGCAAAGAAGAAAGGAGTTTGGTGGAAGCAATTTTGGTTGCTCCTTAAAAGAGCATGGATGCAGGCTTCCCGTGATGCACCAACAAACAAAGTTCGGGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCTGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTACTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACTGTAGGTGTGTTTCCAAAGGAACGGGCAATAGTAGATAGAGAACGTGCTAAAGGCTCCTATTCCTTGGGTCCCTATCTGTTCTCAAAATTGTTGGCTGAGATTCCCATCAGTGCAGCATTTCCATTAATGTTTGGTGCTGTTTTGTATCCAATGGCACGCCTTCATCCTACTTTGCAGAGATTTGGGAAATTCTGTGGCATTGTCACTATGGAATCTTTTGCTGCATCTGCTATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATTGTATTTGGAGGCTACTATGTCAATCCTGAGAATACCCCAATCATCTTCCGCTGGATTCCCAATGTTTCTCTGATTAGATGGGCCTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCATCAACATTCATTTGATATTCAAACTGGAGAACAGGCACTAGAGCGTATTTCTTTTGGAAAAAGTAGGATTAGGGATACGGTGATAGCACAAAATAGAATACTGCTATTTTGGTATTGCACTACCTACCTTCTCCTCGAGAAAAACAAGCCCAAGTACCAGCAACTTGAAAGCCCTATTGACCACAACAAACCGCATTTAAAACTTGAGGAGCTCAGTTCTGAACAAGTTGATCAGACACTTGACGCTCCGCCAGTCATCCAAGTTGATTCCAACCACGAGTCACCTGAAGTAGATCTTGTTGGCCCTTTTATCCTAGAAGGTGCTAAGTAG 2172 0.4526 MAGFGGKKVHQMITGFGGSGLGQVVIAVAVSFLVRIFSAPGPALSLENDIDDAPDNDSADADAPPSGKITPVTIRWRNINCSLSDKSSKSVRFLLKNVSGEARPGRLLAIMGPSGSGKTTLLNVLAGQLAASPWLQLSGVLEFNGKPGSKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPNISTAEERDEFVNNLLFKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYGKFDDIILLTEGSLVYAGPARDEPLAYFSKFGYHCPDHINPAEFLADLISIDYSSADSVYTSQKRIDGLVESFSQRLSAVIYATPITIDDLSNSRKKISKRAVAKKKGVWWKQFWLLLKRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVTAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPISAAFPLMFGAVLYPMARLHPTLQRFGKFCGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPNVSLIRWAFQGLSINEFSGLQFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLFWYCTTYLLLEKNKPKYQQLESPIDHNKPHLKLEELSSEQVDQTLDAPPVIQVDSNHESPEVDLVGPFILEGAK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0425 723 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 675 - -
Ssu7g0425 723 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 675 - -
Ssu7g0425 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 306 IPR027417 -
Ssu7g0425 723 Pfam ABC-2 type transporter 277 334 IPR043926 GO:0140359
Ssu7g0425 723 SMART AAA_5 104 297 IPR003593 -
Ssu7g0425 723 CDD ABCG_EPDR 71 302 - -
Ssu7g0425 723 Pfam ABC transporter 95 247 IPR003439 GO:0005524
Ssu7g0425 723 Gene3D - 68 309 IPR027417 -
Ssu7g0425 723 Pfam ABC-2 type transporter 397 607 IPR013525 GO:0016020|GO:0140359
Ssu7g0425 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 320 IPR003439 GO:0005524
Ssu7g0425 723 MobiDBLite consensus disorder prediction 48 68 - -
Ssu7g0425 723 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0425 Ssu-Chr7 8022693 8030337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0425 94 302 Calmodulin-binding Proteins AT2G36910 27.230 2.23e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0425 7 8022693 8030337 Ssu7g0425 7 8022693 8030337 ECH