Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0412 atGAGCAATCCGAACGAAGAAGAACCGTTATCCAAAGCTGCAGGAGCAGCAGAAGATCTTTACCATCTTCGAGACACTTATTTCCCACCCAACCCCGATGACAGAATCTCCAAGTTGCAACACGAATCCGATCTCGCTCTTAAACTCCTCGATTCCATTCCCCAGtttgttaataaaattttgtcgcCTGTGCCAGAACAAAGAAAATCACCTATGCAACGTGCAACATTTGAATATCTTAGAGGGAAGATGTTGGATGTATTTCCTGACTATAGGAAAGAAGCTGAGGATCATCTATCAAAAGCTGTTAAGTTAAACCCATCTCTTGCTGATGCTTGGCTATGTTTAGGAAATTGTATTTGGAAGAAAGGAGATTTAACTACTGCAAAGAACTGCCTCAGTCTTGCATTAGACAAGGGTCCTAACAAAAGATTCTTTGTCAGTTATCAAtgcttaaaagaaaaatgtctcAAGAATTGGAGAGAATGTGGACTATTTCTTCCTAGAGGAACAATATGTTATGAACTTATGATTGCTGCTAATTGTATGGAGAATCAAGCAGAACTGGTTGAGGAAAGCATTCAACATGCCAAGGAAGCAATCACTTTGGATGTCCAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATGCCTTACAAGTTTTTTTGTCACTGGAGCTTGGGATCATACGAAACTTTTACATTCTTTAAAAGCATATCAAAATGCTGAGAAAGATGAAAGAATGAAGTCCAATccagatttatattttaatagtgcTACTGTTAACAAATATCTAGAGAACTACCTGAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTTAAAGGATCCAGGTCTCAATGCTGCAGAGGAGGTTCAAAAGATAGTCAATTTACTTGACAAGGTGGACAATCTTTTGAAgGGACATGTAAGAGCTAAGCGAATGGCATCTTTGGCATCATCATTAGTTGCTGTTGATTTGAAATCGTCATACAGAAGAGTTACCATAGACCTTCTATCAGAGGGTCCGAATAGAGCTCTTGCAGTAGATGGgaaagtatttttctttgttaggAGTGAGAGTGTTGCTCCCCTATACTATTTGCTTTGTGATTCAAATCAATCTTGCTTTGTTCTCTCGATTTATGGTGTACGTACTGATGTGATTAAAGAAGGAGATCAGCTAACATTGCTTGACCCTTATTTTCGCAATGTTGATTTGTCCTGGAAGGAGAAGcattACCAGTTCAAATCTATACGCCTGGATTTCTATGAACAAGTGCTTGTAAATGGAAAAGCTTTGACTCCTCAACAAGCTGTTAGTACGTCAATATATGCACAACATAAACCCTGA 1353 0.3718 MSNPNEEEPLSKAAGAAEDLYHLRDTYFPPNPDDRISKLQHESDLALKLLDSIPQFVNKILSPVPEQRKSPMQRATFEYLRGKMLDVFPDYRKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLTTAKNCLSLALDKGPNKRFFVSYQCLKEKCLKNWRECGLFLPRGTICYELMIAANCMENQAELVEESIQHAKEAITLDVQDGNSWYNLGNACLTSFFVTGAWDHTKLLHSLKAYQNAEKDERMKSNPDLYFNSATVNKYLENYLRALSGFEAAALKDPGLNAAEEVQKIVNLLDKVDNLLKGHVRAKRMASLASSLVAVDLKSSYRRVTIDLLSEGPNRALAVDGKVFFFVRSESVAPLYYLLCDSNQSCFVLSIYGVRTDVIKEGDQLTLLDPYFRNVDLSWKEKHYQFKSIRLDFYEQVLVNGKALTPQQAVSTSIYAQHKP 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0412 450 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 8 374 - -
Ssu7g0412 450 Coils Coil 180 200 - -
Ssu7g0412 450 Gene3D - 310 449 IPR038645 -
Ssu7g0412 450 Gene3D Tetratricopeptide repeat domain 3 309 IPR011990 GO:0005515
Ssu7g0412 450 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 8 374 - -
Ssu7g0412 450 SUPERFAMILY TPR-like 82 276 IPR011990 GO:0005515
Ssu7g0412 450 Pfam Tetratricopeptide repeat protein 5 OB fold domain 331 442 IPR032076 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0412 Ssu-Chr7 7750682 7762792 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0412 7 7750682 7762792 Ssu7g0412 7 7750682 7762792 ECH