Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0409 ATGGCCGCGTCGCCGTCGTCGTCGTCCACCGCGGCGTCCACGAACATCATGCTGGCGATCTTCGAGAAGAAGACGAACGGCGTGGATCTGTACCGCCCTCTGCGCAACTACGTGACCTTCCACTACTCGGAGCGCGAGGCCCAGAACCTCGAAGACGATCTCCAAACCCTAAAGCAACTCCGCTCCGACCTCGAGCGCCACACCGATCCGTCCCTCCCCGCGCGCCGCGACCTCCTCCAAACCTACTTCAAGTCCCTCTGCCTCGTCGAGACGCGCTTTCCAATCTCCCCCGACCCGGACCACGTCAACGCCCTCACCTTCGTCTGGTTCGACGCCTTCAAGCCCAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCCTCCGTGCTCTTCAACTTGGGCGCCGTCTACAGCCAGATTGGGCTGTCGTACGACCGCAACACCGTCGACGGCCGCCGCCAGGCCTCCCACGCCTTCATCGCCGCCGCCGGCTCCTTCGCCTTCCTCCGCGACAACGCGTCGATGAAGGCCTCCGTCGGGAGTTCCACCACCGTCGATTTGTCCGTCGAGTGCGCCGGGATGCTGGAGAAGCTCATGCTCGCTCAGGCGCAGGAGTGCGTCTTCGAGAATACCATTGCCAAAGGGAGCACTCCCGGTGTCTGCGCCAAGATCTCTAGGCAGGTTGGGATATATTATGAGGAAGCTTTAGCTGCGCTGAATGTCGTGCCTTTGAGCCAGCATTTCGATAAGTCCTGGATAGTACATGTCCAGTTAAAGGCGGCTCTGTTCTATGCAGAAGCTTGTTATAGGTATGGATTGGAGCTGCATGAGAAAGAGGAGATAGCAGAGGAGATTGCACGACTGCGGAGTGCTGTTAATGTGCTGGCTGAGGCGAAGAAGAGCTCGAAGGGTGCTGCAGCACAAATTCTAGATGCAATTGGCAAGTTAGAGGCCAATATTAACCGGAACCTGGAAAGGGCTGTCAAGGAGAATGATAGGGTTTACCTCATGAGAGTTCCTTCGCCGAGTTCGTTACCGCCTCTTCCGGCATTTTCTATGGTGAAGCCTATGGCGATGAATGAGGTGCTGGATGCAAGCAAAGAGAAGATGTTTGCGAGTCTTGTTCCTGACAGCAGTGCAAAGGCCCTCTCCCGGTATACTGAAATGGTAGACGATGTTATAAGAGCACAGGCTGAGAAGTTACAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAACTGCCAGATTCCATTCTTGCTTTGGAAGGAAATTTTACTTTACCAACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGCTTGGAAGCAGAGTTGCAGCAACTTAAGGACCTAAGGAGGGTGAATCAAGAGTTACTGGTCCAGACTGAGGAGTTGTTGCAgaaggaaggaagagaagatTCTCAATTTAGAAGCCAATTTGGCACAAAATGGACCAGGCCTCAATCAAGCACCTTGACCAAGAACTTGCAGGATAGGCTAAACAGGTTTGCAGGTAACTTGAAGCAGGCTGCCGAAAGTGATGGTAGGATTGAGCGTTCAGTTAGAGAACATTCAGCACTCATGTCTATTCTGGATGCTCGTCCGATTGAATCGGCACTTCCAAGCTTGGCAAGGCCGATTATGTCTTTTGATCAAAATGAAGATGCTGTTGTGGGGTCTCTCAAGCAAAGCTTGAGGCAACTAGAAACTTTAGGAGCTCAAAGGGCTGGTCTTGAAGATATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACATCCACCGGTTCTTATGATGATCTCTTCAAGAAGGAGATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATTGAGGCACAAGAGCAATTGTTGCTGcagatccagGCTCAAAATGATGAGTTCTCTGTTATCTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAAGCCTACAAGCAGATTGAAGCTGCAATAGCAAAATTTCGAGAAATAAAGGACAACATTAATGAAGGATTAAAATTCTATGTTACTCTGCAGGATGCAATCACAAATGTAAAGCAGCAGAGCAACGACTTTGTAATGACAAGGAACATCCAGTGCAGGGAAATGATTGAAGATGTTCAGAGACAAGTGGCTGGTCTGAGTTTCCAGGATAACAAAAACACAGGTGCTTTTAACAGCAACTACCCTTCAGTGGGAAGCCAAAATCAAAGATCCACTACACAAACAGATCCTCGTCCCCAAACACCTTATTATCAGCCAGTTGAGCAGCCGCCAGTTCCTCCCTATGGCCATCATCCCCCTCCCCCATATGGTGGTCCTGCACATCATCAGCCTCCACCTCCATACCACATTCCACCAACATCAACTGCCCCATACCCACCCCctcaggttcatcagcagccACCTGCAAACCATGAGTATGGCCAACCAGCATATCCCGGATGGCGTGGTCCATACTACAATGCACAAGCACAGCAACCTGGTTCTGTTCCTCGGCCTCCTTATACCATTCCATCTCCATATCCTCCGCCCCACCAAAGTGGCTACTATAAGCAGCAATAG 2619 0.4956 MAASPSSSSTAASTNIMLAIFEKKTNGVDLYRPLRNYVTFHYSEREAQNLEDDLQTLKQLRSDLERHTDPSLPARRDLLQTYFKSLCLVETRFPISPDPDHVNALTFVWFDAFKPKQKASQQNIHLEKASVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASVGSSTTVDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGIYYEEALAALNVVPLSQHFDKSWIVHVQLKAALFYAEACYRYGLELHEKEEIAEEIARLRSAVNVLAEAKKSSKGAAAQILDAIGKLEANINRNLERAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRAQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEGREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHSALMSILDARPIESALPSLARPIMSFDQNEDAVVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYDDLFKKEIAKYDHICEEIAQNIEAQEQLLLQIQAQNDEFSVIFNLEDYKASREKAYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDNKNTGAFNSNYPSVGSQNQRSTTQTDPRPQTPYYQPVEQPPVPPYGHHPPPPYGGPAHHQPPPPYHIPPTSTAPYPPPQVHQQPPANHEYGQPAYPGWRGPYYNAQAQQPGSVPRPPYTIPSPYPPPHQSGYYKQQ 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0409 872 Coils Coil 628 648 - -
Ssu7g0409 872 Gene3D alix/aip1 like domains 424 705 - -
Ssu7g0409 872 Coils Coil 40 67 - -
Ssu7g0409 872 Gene3D alix/aip1 like domains 11 377 IPR038499 -
Ssu7g0409 872 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 9 861 - -
Ssu7g0409 872 CDD V_Alix_like_1 378 714 - -
Ssu7g0409 872 Pfam ALIX V-shaped domain binding to HIV 432 716 IPR025304 GO:0005515
Ssu7g0409 872 MobiDBLite consensus disorder prediction 769 819 - -
Ssu7g0409 872 Coils Coil 280 300 - -
Ssu7g0409 872 ProSiteProfiles BRO1 domain profile. 15 410 IPR004328 -
Ssu7g0409 872 SMART BRO1_2 16 400 IPR004328 -
Ssu7g0409 872 Coils Coil 658 685 - -
Ssu7g0409 872 MobiDBLite consensus disorder prediction 736 768 - -
Ssu7g0409 872 Coils Coil 452 479 - -
Ssu7g0409 872 Pfam BRO1-like domain 17 395 IPR004328 -
Ssu7g0409 872 MobiDBLite consensus disorder prediction 850 864 - -
Ssu7g0409 872 Coils Coil 579 599 - -
Ssu7g0409 872 MobiDBLite consensus disorder prediction 736 872 - -
Ssu7g0409 872 CDD BRO1_Alix_like_1 17 372 - -
Ssu7g0409 872 Gene3D alix/aip1 in complex with the ypdl late domain 378 656 - -
Ssu7g0409 872 PANTHER PCD6 INTERACTING PROTEIN-RELATED 9 861 IPR045251 GO:0071985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0409 7 7598271 7605955 Ssu7g0409 7 7598271 7605955 ECH