Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0402 ATGGAAAAGGGTCTCTTAGAGAAGGAGAGAGAGGCAGAGGGTGGTTTAGAAATAACATGGAGCGTGTTTGGTCAAGAGCTTGCTCTATCTAGCACAGCCATTGCCATCTCTCTCTGTGCTGTCTCTGGCTTCAGTCTTATTTTTGGAATGTCATGTGCACTGGAAACTCAATGTGGACAAGCATATGGGGCACAGCAATATCGAAAATTTGGCATTCAAATTTATGCTGCTATTGTCTCTCTTACTTTAGCTTGTCTTCCTCTGTCTCTTTTGTGGATCTACTTGGGGAAGCTACTCATTTTACTTGGCCAAGACCCTTTGATCTCACAAGAAGCTGGAAAATTTGCTCTTTGCATGATCCCTGCTCTCTTTGCTTATGCAACACTCCAGACCTTGGTTCGATACTTTCTGATGCAAAGTTTGATCCGTCCCCTTGTCATAAGTTCCTCCATTACTCTTTGCTTCCATGTAGCTTTCTGTTGGCTATTGGTTTTTAAATATGGATTTGGTAGCTTAGGAGCAGCATTTTCTATTGGTACTTCATACTGGCTGAATGTGATTTTACTTGGATTATATATGAAACTCTCTACTGAGTGTGAAAAGACTCGGGTCCCAATTTCAATGGAACTATTCCATGGGATTGGAGAATTCTTTCGCTACGCTATTCCTTCTGCTGGAATGATTTGCCTTGAATGGTGGTCATTTGAGCTGCTAACCTTGCTTTCTGGTCTTCTACCAAATCCAGAGCTTGAAACTTCTGTCTTATCCATATGTTTATCCATCATCACAACAATCTACACAATCCCAGAAGCAATTGGCTCAGCAGCAAGCACTAGAGTTTCAAATGCATTAGGAGCTGGAAGTTCACAATCAGCAAGAGTGTCTGTTTCTGCTGCTATGACTCTTGCAGCTTCTGAGGCCATTCTGGTGAGCTCAATCATTTTTGCCTGCAGGCAGGTTTTAGGTTATGTATTTAGCAAAGAGCAGGACGTGGTGGATTATGTCACAGATATGGTTCCTCTTTTAAGTCTATCTGTTATACTGGACACCTTACACGGTACCCTTTCAGGTATTGCTAGAGGATGTGGGTGGCAGCACTTAGGAGCATATGTAAACCTTGGAGCTTATTATGTTTTGGGAATTCCAATTGCTGCTATATTGGGCTTCTGGGTACAATTAAGAGGAAAAGGACTGTGGATTGGAATACTGATTGGTGCTTTCTGCCAAACAGTTCTGCTCTCTCTCATAACAAGTTGTACAAACTGGGAAAAACAGGTTTGCCTCTACTTCCAAGTTTTGGATCAAACACCACCTTCTTCCGCCAAAGTCACCTGGGATGATGTCATTAAGATGGGTGACCAAGTCTCCAAACAGGCAACCACAGTGGGAATGCTTTGGACTGGGGAGAAGCCAGAGTCCAAAGCAGTTGAGGAAAATATGGCATCATACTTCAACACACTACGAGGTTTCCTTTTGCTTTCCCATGGCAGTACAGTAGGTGCGGGGCCTACTTTGTCTTCCACTGTTCATGCATCTGTGAAGCAAGTTGTTGATTCCAGCTTCAGGTTGATGAAGGAAACTGTCTCTTTATACGGGTCCCATTGTAAAGACCAGAAACTATCAGTACCACAATTGGTTGGTGCTGTATGGGAAGCATGTTCTGCCCTCAAAAAGAATCCTTCAACAAATATTACAGCAATTGGGCGAGGAATGACACAGGTTGCTGTTTCAGTGAAGGACGTTCTTCGTGAGATGAAAGAATTGAAGCCTGTTTCATGTGACGATCAAGTTGACAAAGCTGCCGGTGAGAGTTGTGAAGCAGCATTTGAGCCACATGATGATAATTCAAGTGAAGGTGACCTAGGGAATGACCTGTCGCCTGAAGAGATGAAAGTGGCTGAAAGAGCAATTGAGGTTGTCTCTTATACGCTTTCAGTTATAAAAGTACTTATTCACTCTATCATAGGCTTGCTTAAGCTGGAAAAACCAAATGACAACAGCGGTTTTGTGAATTCGCTGGAGAAGTTGTTGCAGTTGTGTCAGGAACTTGGTCGACAGATCGATGAGATTGGAGCTTGCCTTTATCCCCCACAAGAGATTCCTGTCATGAAGGCAGCTTTGGAGAAAATCCACAGCATTATTGATGTTATGCAAGTGGAGGTAGGAGAACTTTTAGGCGCATCAGATGTATTTCTGGAGCCATGCAATGATTTGAGGAGTTCACTGAGACAGCTTGCATCTGAACTAAGTAACTCTAGTACTGCTGATATTGAAGCCAGAGTGGAAAACATAACATTAACCAATAAGTAG 2310 0.429 MEKGLLEKEREAEGGLEITWSVFGQELALSSTAIAISLCAVSGFSLIFGMSCALETQCGQAYGAQQYRKFGIQIYAAIVSLTLACLPLSLLWIYLGKLLILLGQDPLISQEAGKFALCMIPALFAYATLQTLVRYFLMQSLIRPLVISSSITLCFHVAFCWLLVFKYGFGSLGAAFSIGTSYWLNVILLGLYMKLSTECEKTRVPISMELFHGIGEFFRYAIPSAGMICLEWWSFELLTLLSGLLPNPELETSVLSICLSIITTIYTIPEAIGSAASTRVSNALGAGSSQSARVSVSAAMTLAASEAILVSSIIFACRQVLGYVFSKEQDVVDYVTDMVPLLSLSVILDTLHGTLSGIARGCGWQHLGAYVNLGAYYVLGIPIAAILGFWVQLRGKGLWIGILIGAFCQTVLLSLITSCTNWEKQVCLYFQVLDQTPPSSAKVTWDDVIKMGDQVSKQATTVGMLWTGEKPESKAVEENMASYFNTLRGFLLLSHGSTVGAGPTLSSTVHASVKQVVDSSFRLMKETVSLYGSHCKDQKLSVPQLVGAVWEACSALKKNPSTNITAIGRGMTQVAVSVKDVLREMKELKPVSCDDQVDKAAGESCEAAFEPHDDNSSEGDLGNDLSPEEMKVAERAIEVVSYTLSVIKVLIHSIIGLLKLEKPNDNSGFVNSLEKLLQLCQELGRQIDEIGACLYPPQEIPVMKAALEKIHSIIDVMQVEVGELLGASDVFLEPCNDLRSSLRQLASELSNSSTADIEARVENITLTNK 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0402 769 Pfam MatE 223 385 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu7g0402 769 Pfam MatE 27 162 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu7g0402 769 Gene3D Talin, central domain 433 556 - -
Ssu7g0402 769 PANTHER PROTEIN DETOXIFICATION 26 433 - -
Ssu7g0402 769 Pfam Grap2 and cyclin-D-interacting 447 718 - -
Ssu7g0402 769 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 433 - -
Ssu7g0402 769 TIGRFAM matE: MATE efflux family protein 27 399 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu7g0402 769 MobiDBLite consensus disorder prediction 604 625 - -
Ssu7g0402 769 Gene3D I/LWEQ domain 560 730 - -
Ssu7g0402 769 CDD MATE_eukaryotic 26 427 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0402 Ssu-Chr7 7140601 7170765 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0402 7 7140601 7170765 Ssu7g0402 7 7140601 7170765 ECH